Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18700 207 / 2e-64 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G45810 184 / 2e-55 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT1G29230 174 / 1e-51 ATCIPK18, ATWL1, CIPK18, SnRK3.20 SNF1-RELATED PROTEIN KINASE 3.20, WPL4-LIKE 1, CBL-interacting protein kinase 18 (.1) AT2G34180 164 / 4e-48 ATWL2, CIPK13, SnRK3.7 SNF1-RELATED PROTEIN KINASE 3.7, WPL4-LIKE 2, CBL-interacting protein kinase 13 (.1) AT1G01140 76 / 5e-16 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT1G30270 70 / 6e-14 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G58380 67 / 7e-13 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT5G45820 63 / 2e-11 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G07070 62 / 3e-11 CIPK2, SnRK3.2 SNF1-RELATED PROTEIN KINASE 3.2, CBL-interacting protein kinase 2 (.1) AT2G26980 62 / 5e-11 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007284 [exp] 336 / 2e-115 AT4G18700 684 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10025397 [exp] 210 / 4e-68 AT4G18700 347 / 4e-118 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10015275 [exp] 214 / 5e-67 AT4G18700 736 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10007283 [exp] 72 / 1e-14 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10021852 [exp] 71 / 5e-14 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10002692 [exp] 71 / 5e-14 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10036280 [exp] 69 / 3e-13 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10030210 [exp] 68 / 4e-13 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10008582 [exp] 64 / 1e-11 AT5G58380 570 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G067600 [exp] 205 / 5e-63 AT4G18700 720 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.004G058300 [exp] 199 / 4e-61 AT4G18700 735 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.011G067500 [exp] 86 / 3e-19 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.006G186200 [exp] 77 / 4e-16 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.002G177900 [exp] 75 / 1e-15 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.018G108500 [exp] 72 / 2e-14 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.014G104200 [exp] 71 / 3e-14 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.016G133500 [exp] 71 / 4e-14 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G127500 [exp] 71 / 5e-14 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.013G156000 [exp] 69 / 1e-13 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain
Representative CDS sequence Show only first row Show all	>Lus10029231 pacid=23139977 polypeptide=Lus10029231 locus=Lus10029231.g ID=Lus10029231.BGIv1.0 annot-version=v1.0 ATGGAGAATCGATGGTTCAAGAGAGGGTTCAAGCACATCAAATTCTACATAGAGGATGATAGGGTTTACAATCTAGTAGACGAATTGAACCAGGTGGATC AGCACGACGATTCTGCCTCCGATACATCAATGTCGGAGTCCGATACCGAAATGGAAGCTAGAAGACGTGTTACTTCTCTACCTAGACCGGCTAGCTTGAA CGCATTCGACATCATATCGTTCTCGCCAGGTTTCAATCTATCAGGGCTGTTCGAGGAAGGCGGAGAAGGTTCGAGATTTGTCTCGGGGGCGCCTGTGACG AAGATCATTTCGAAGCTGGAGGAGATTGCTAAGCTGGTGAGCTTTACAGTGAGGAAGAAGGATTACAGGGTGAGCTTGGAAGGGAGCAGGGAAGGTATTA AAGGGCCATTAACGATTGCTGCAGAGATTTTCGAGCTAACTCCTAAGTTGGTGGTCGTCGAAGTTAAGAAGAAAGGTGGAGATAAAGGGGAGTATGAGGA TTTCTGCAACAAGGAGCTGAGACCTGGGTTGCAGAAGCTGAACATGGATCAGGAATTTGAAGATGCTTCTGCTGCTTCTTCCACTGCCGGTGATTCGCCA CGATTATCGACCGAGTCTTTGCCCTCGTTTTCGTCTGCGTATATACCTTCTGATACTGAATAA
AA sequence Show only first row Show all	>Lus10029231 pacid=23139977 polypeptide=Lus10029231 locus=Lus10029231.g ID=Lus10029231.BGIv1.0 annot-version=v1.0 MENRWFKRGFKHIKFYIEDDRVYNLVDELNQVDQHDDSASDTSMSESDTEMEARRRVTSLPRPASLNAFDIISFSPGFNLSGLFEEGGEGSRFVSGAPVT KIISKLEEIAKLVSFTVRKKDYRVSLEGSREGIKGPLTIAAEIFELTPKLVVVEVKKKGGDKGEYEDFCNKELRPGLQKLNMDQEFEDASAASSTAGDSP RLSTESLPSFSSAYIPSDTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029231 [exp]	0	1
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Lus10023705 [exp]	1.0	0.9027
AT2G39050		ArathEULS3	Euonymus lectin S3, hydroxypro...		Lus10006551 [exp]	1.7	0.8776
AT2G46620			P-loop containing nucleoside t...		Lus10005991 [exp]	4.2	0.8571
AT3G27880			Protein of unknown function (D...		Lus10032145 [exp]	4.7	0.8862
AT5G13810			Glutaredoxin family protein (....		Lus10039537 [exp]	4.9	0.8736
AT5G56980			unknown protein		Lus10014282 [exp]	7.1	0.8419
					Lus10031757 [exp]	8.8	0.8099
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10015970 [exp]	8.9	0.8445
AT1G18480		AtSLP2	Shewenella-like protein phosph...		Lus10014985 [exp]	11.5	0.8348
AT5G60570			Galactose oxidase/kelch repeat...		Lus10037413 [exp]	12.0	0.8705

Compare expression of checked genes

Lus10029231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.