Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18700 466 / 6e-165 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G45810 436 / 2e-153 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT1G29230 425 / 1e-148 ATCIPK18, ATWL1, CIPK18, SnRK3.20 SNF1-RELATED PROTEIN KINASE 3.20, WPL4-LIKE 1, CBL-interacting protein kinase 18 (.1) AT2G34180 399 / 2e-138 ATWL2, CIPK13, SnRK3.7 SNF1-RELATED PROTEIN KINASE 3.7, WPL4-LIKE 2, CBL-interacting protein kinase 13 (.1) AT5G45820 382 / 9e-133 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT2G30360 379 / 2e-131 PKS5, CIPK11, SnRK3.22, SIP4 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) AT5G58380 373 / 9e-129 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT5G01810 367 / 8e-128 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT4G30960 369 / 9e-128 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G25110 363 / 2e-124 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015275 [exp] 500 / 5e-178 AT4G18700 736 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10007284 [exp] 423 / 5e-149 AT4G18700 684 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10009103 [exp] 390 / 4e-136 AT2G30360 501 / 1e-176 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Lus10025245 [exp] 390 / 7e-136 AT5G01820 504 / 1e-177 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) Lus10036280 [exp] 385 / 4e-134 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10021852 [exp] 384 / 1e-133 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10042229 [exp] 383 / 5e-133 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 374 / 3e-129 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10022749 [exp] 373 / 6e-129 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G067600 [exp] 466 / 2e-164 AT4G18700 720 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.004G058300 [exp] 461 / 1e-162 AT4G18700 735 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.016G133500 [exp] 390 / 1e-135 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067500 [exp] 388 / 4e-135 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.016G133900 [exp] 384 / 1e-133 AT5G01820 490 / 2e-172 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) Potri.019G048800 [exp] 382 / 9e-133 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.006G186200 [exp] 382 / 1e-132 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.013G156000 [exp] 382 / 1e-132 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G127500 [exp] 380 / 9e-132 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.018G108500 [exp] 379 / 2e-131 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10029232 pacid=23139907 polypeptide=Lus10029232 locus=Lus10029232.g ID=Lus10029232.BGIv1.0 annot-version=v1.0 ATGGCGCCGAAAGTCTCGACCTCCTCCGCCGGCGGCGGAGGCAACCAGCCGTTGCTTCTAGGCCGGTACGAGGTCGGCAAGCTTCTTGGCCACGGAACCT TCGCGAAGGTCTACCACGCTAGAAACGTGAGGACGAACGAGAGCGTGGCGATTAAGGTAATTGACAAGGAGAAGATCATGAAAGGCGGCCTGATCGCCCA CATCAAGCGCGAGATCTCGAACCTCCGCCGCGTCCGCCACCCGAACATCGTGCACCTATTCGAGGTTATGGCCACCAAGGCGAAGATCTACTTCGTCATG GAGTATGTCCGCGGCGGAGAGCTGTTCAACAAGGTCGCCAAGGGCAGATTAAAGGAAGACGTCGCCCGGAGGTATTTCCAGCAATTGATGTCGGCCGTCG CCTTTTGCCACGCCAGAGGAGTCTTCCACCGCGATCTCAAGCCGGAGAACCTGCTTCTAGATGAGGAAGGAAACCTAAAGGTCTCTGATTTCGGACTCAG CGCCGTGGCCGATCAGATCCGTCAGGACGGGCTGTTCCACACTTTCTGTGGAACTCCGGCCTATGTAGCGCCGGAGGTTCTCGGGAGGAAAGGATACGAC GCTGCTAAGGTAGATATCTGGTCCTGTGGAGTTATCCTGTTTGTTTTGATGGCTGGATATTTACCTTTCCATGATCAGAACATTATGATGATGTATAAGA AGATTTACAAAGGGGAATTTCGTTGCCCTAGGTGGTTCTCCCCTGAATTAGCTAAGCTATTGACTAAATTACTCGATATTGACTAA
AA sequence Show only first row Show all	>Lus10029232 pacid=23139907 polypeptide=Lus10029232 locus=Lus10029232.g ID=Lus10029232.BGIv1.0 annot-version=v1.0 MAPKVSTSSAGGGGNQPLLLGRYEVGKLLGHGTFAKVYHARNVRTNESVAIKVIDKEKIMKGGLIAHIKREISNLRRVRHPNIVHLFEVMATKAKIYFVM EYVRGGELFNKVAKGRLKEDVARRYFQQLMSAVAFCHARGVFHRDLKPENLLLDEEGNLKVSDFGLSAVADQIRQDGLFHTFCGTPAYVAPEVLGRKGYD AAKVDIWSCGVILFVLMAGYLPFHDQNIMMMYKKIYKGEFRCPRWFSPELAKLLTKLLDID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029232 [exp]	0	1
AT5G17600			RING/U-box superfamily protein...		Lus10013618 [exp]	2.6	0.8849
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Lus10014657 [exp]	3.9	0.8611
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10016960 [exp]	9.9	0.8436
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10028650 [exp]	10.2	0.8360
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10038356 [exp]	13.7	0.8589
AT1G04360			RING/U-box superfamily protein...		Lus10021197 [exp]	15.2	0.8814
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029231 [exp]	15.3	0.8331
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10023576 [exp]	19.0	0.8454
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10037672 [exp]	19.2	0.8145
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10012280 [exp]	20.2	0.8424

Compare expression of checked genes

Lus10029232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.