Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45800 611 / 0 MEE62 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) AT2G24230 302 / 3e-91 Leucine-rich repeat protein kinase family protein (.1) AT5G58150 247 / 3e-71 Leucine-rich repeat protein kinase family protein (.1) AT1G55610 185 / 9e-49 BRL1 BRI1 like (.1.2) AT5G07280 178 / 2e-46 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G39400 164 / 4e-42 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT3G13380 158 / 5e-40 BRL3 BRI1-like 3 (.1) AT3G56100 146 / 2e-36 IMK3, MRLK meristematic receptor-like kinase (.1) AT1G69990 145 / 2e-36 Leucine-rich repeat protein kinase family protein (.1) AT5G24100 144 / 6e-36 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007287 [exp] 1078 / 0 AT5G45800 657 / 0.0 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) Lus10036608 [exp] 328 / 6e-101 AT2G24230 1134 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035826 [exp] 314 / 6e-96 AT2G24230 1081 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033533 [exp] 180 / 3e-47 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 172 / 1e-44 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10022679 [exp] 157 / 6e-40 AT3G51740 926 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014996 [exp] 153 / 2e-38 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10000814 [exp] 151 / 9e-38 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10006817 [exp] 149 / 7e-37 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G067900 [exp] 743 / 0 AT5G45800 731 / 0.0 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) Potri.004G058500 [exp] 738 / 0 AT5G45800 709 / 0.0 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) Potri.006G185100 [exp] 282 / 1e-83 AT2G24230 1159 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G107400 [exp] 266 / 9e-78 AT2G24230 1153 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G169600 [exp] 189 / 3e-50 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.001G472900 [exp] 186 / 3e-49 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.015G141200 [exp] 176 / 8e-46 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.012G139000 [exp] 165 / 3e-42 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G126300 [exp] 163 / 6e-42 AT3G51740 1038 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.010G101100 [exp] 152 / 3e-38 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10029235 pacid=23139906 polypeptide=Lus10029235 locus=Lus10029235.g ID=Lus10029235.BGIv1.0 annot-version=v1.0 ATGAAACCCGTATACATATTAGCTCTGTTTCTCTCCATAACCATACTAGCCCAACCATCATCATCATCGTCAACCAACTCAACAACATGCTCCAACTCCA CAGACCACCACCTCCTCTCTAAGGCCTTCACCTCCGTCACCAATTTCAACCTCTCCTTATTCTTCCCAAACTGCTCCTCCACCATCACAGAAATCAACCT CCCTTCCGAAAACCTCTCCGGCACCGTTTCATGGCACCACCTCCAAAATCTCTCCCACCTCCACGTCATCAACCTCTCCGGTAACTCCCTCCACGGCCAC CTCCCCTCCTGGCTCTGGTCCCATAACAACCTCACCGTCCTCAACCTCGCCCACAACCACCTCGGTGGCCCCGTCGGAAACGACAACACTTCGCTGTCGT TTCATCCTTCTTCAATCAGAGTGCTGAACCTTTCCGGCAACAGGTTCACCAACAACTCCGTCAAGCTCTCCACTTTCCCCAGTCTCGAAATCCTCGACCT GTCACAAAACCATCTCGGAAATCTCCCGTCCGGAATAAAAAAATTGGCGAAGCTACAGAGCCTCAACATCTCCGGTTGCAGAATCTCCGGCGATATCAAG GAAATTTCTCGAATTCGAACATTGAAGTACCTCGACATCTCGAATAACATCTTCACCGGAGCTTTCCCTTCCGATTTCCCTAATTTGACCAAAGTCAACT CCCTCAACATCTCATTCAACAACTTCACCGGCCTCGTCGGCTCCGACGAGTATCGAAAATTCGGTAAGTCAGCATTCATCCACGCCGGCAGCAATCTGGT ATTCAATTCATCCACATTAAAATTGAAATCGAGATCGAAATCGGCTCCCATTGTTGCGGTTTCGAAACGTAACGTAAACAGCCACCACATTCATCGAGTT GTGATCATCGCCGTGTCATCGGCGTCGGCGTTTCTGATTCTGATCTCGGCGGCGGTCTGCTTGGTGCTCTGCTTCTTCTACCGAAGGCGCAGAGCAACGA CGAACCGGAAGAAGAAATGGGCGATATCGAAACCGGTTCAGTTTCCGTACAAGATGGAGAAATCAGGACCGTTCAGCTTCGAAACCGAATCGGGTTCGTC ATGGGTGGCGGACATCCGGGAGCCCACGTCGGCGCCCGTGGTGATGTGTGCGAAGCCGTTGATGAACTTGACGTTCATGGACCTGATCGCCGCCACGTCA CACTTCGGGAAGGACTCTCTGTTGGCGGAAGGGAGGTGTGGGCCCATGTACCGAGCTGTCCTTCCAGGGGAGGTACACGTGGCGATTAAGGTGTTGGAGA ACGCGCGGGACATGGGTCGTGATGAAGCTGTGGGGATGTTTGAAAATTTGTCAAAGCTCAAGCACCCTAACCTCTTGCCCCTCTGTGGCTACTGCATTGC AGGGACTGAGAAGTTGGTGCTCTACGAGTTCATGTCCAACGGGGATCTCCACCGGTGGCTGCACGAGCTCCCCACCCTCGAACCAAACGTCGAGGACTGG ACCACCGACACGTGGCAGGATCGCGACACCCACGCCCCCGGGGTTCATGTGTCGTCGTCCTATTACTCCTCCCCCAAGGAGGAAGACAAGAGGAATTGGT TGATTCGTCATCGGATTGCCGTCGGGGTGGCGCGTGGGCTGGCTTACCTCCACCACACCGGGTCAGCTCACGGACACCTGGTCTCGTCGAACGTGTTGTT GTCCGACACGCTCGAGCCTCGTGTGGCGGATTTCGGGCTGAGGATTTTGGGGTCAAATAATCGTAAACCAGTTGGATTTGAGGATGATGTGTATTGTTTC GGGGCGGTGTTGATTGAGTTGATGACTCGAAAGCCCGGGAGCGAGGAGATTGTGCGGTGGGTGAGGAAGTTGGTGAGGGAAGGGCGGGGGTTGGATGCCC TCGACTCGAGGTTGGTGCGCGGTAGCGAGTTCTTGAACAGGATGGTCGAGTGCCTGCGGGTTGGGTATTTATGTACGGCCGAGTCGCTCGAAAAGCGGCC GACGATGCAACAGGTTGTGGGGTTGCTCAAGGACTTACACCCCGAGTTTGACTCGTAA
AA sequence Show only first row Show all	>Lus10029235 pacid=23139906 polypeptide=Lus10029235 locus=Lus10029235.g ID=Lus10029235.BGIv1.0 annot-version=v1.0 MKPVYILALFLSITILAQPSSSSSTNSTTCSNSTDHHLLSKAFTSVTNFNLSLFFPNCSSTITEINLPSENLSGTVSWHHLQNLSHLHVINLSGNSLHGH LPSWLWSHNNLTVLNLAHNHLGGPVGNDNTSLSFHPSSIRVLNLSGNRFTNNSVKLSTFPSLEILDLSQNHLGNLPSGIKKLAKLQSLNISGCRISGDIK EISRIRTLKYLDISNNIFTGAFPSDFPNLTKVNSLNISFNNFTGLVGSDEYRKFGKSAFIHAGSNLVFNSSTLKLKSRSKSAPIVAVSKRNVNSHHIHRV VIIAVSSASAFLILISAAVCLVLCFFYRRRRATTNRKKKWAISKPVQFPYKMEKSGPFSFETESGSSWVADIREPTSAPVVMCAKPLMNLTFMDLIAATS HFGKDSLLAEGRCGPMYRAVLPGEVHVAIKVLENARDMGRDEAVGMFENLSKLKHPNLLPLCGYCIAGTEKLVLYEFMSNGDLHRWLHELPTLEPNVEDW TTDTWQDRDTHAPGVHVSSSYYSSPKEEDKRNWLIRHRIAVGVARGLAYLHHTGSAHGHLVSSNVLLSDTLEPRVADFGLRILGSNNRKPVGFEDDVYCF GAVLIELMTRKPGSEEIVRWVRKLVREGRGLDALDSRLVRGSEFLNRMVECLRVGYLCTAESLEKRPTMQQVVGLLKDLHPEFDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45800		MEE62	maternal effect embryo arrest ...		Lus10029235 [exp]	0	1
AT2G32300		UCC1	uclacyanin 1 (.1)		Lus10027143 [exp]	7.1	0.8570
AT4G37250			Leucine-rich repeat protein ki...		Lus10014098 [exp]	8.6	0.7802
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10006317 [exp]	11.0	0.8689
AT5G28830			calcium-binding EF hand family...		Lus10015916 [exp]	15.2	0.7885
					Lus10024121 [exp]	16.2	0.8581
AT5G15290		CASP5	Casparian strip membrane domai...		Lus10015375 [exp]	22.6	0.8301
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10013016 [exp]	23.0	0.8174
AT5G45800		MEE62	maternal effect embryo arrest ...		Lus10007287 [exp]	23.2	0.7591
AT5G45580	GARP		Homeodomain-like superfamily p...		Lus10012142 [exp]	26.6	0.8536
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020115 [exp]	31.3	0.8541

Compare expression of checked genes

Lus10029235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.