Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29220 153 / 2e-44 transcriptional regulator family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007288 [exp] 353 / 8e-122 AT1G29220 217 / 2e-67 transcriptional regulator family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G068100 [exp] 207 / 2e-64 AT1G29220 262 / 1e-84 transcriptional regulator family protein (.1.2) Potri.004G058700 [exp] 158 / 1e-45 AT1G29220 197 / 1e-59 transcriptional regulator family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07818 [flax] [poplar] HCNGP HCNGP-like protein
Representative CDS sequence Show only first row Show all	>Lus10029236 pacid=23139949 polypeptide=Lus10029236 locus=Lus10029236.g ID=Lus10029236.BGIv1.0 annot-version=v1.0 ATGGCCTCGCGGAAGAAACAGTCGGAAGGGATCGCTCTGCTCTCGATGTACAGTGACGAAGACGACGAGGAGATGGAGGAACTTGGAGAGGGAGACGCGG AGATGCAACGGCGGGAACAGGAGCAGCAACCGGAAGGTAGCGGCGGTGATAATCCGGAATCGAACCATATGGAAGAAGATTTGACGAACGACGCGATGGT TACGGATGAGTACGGTGATGGAGGTGAGCAGACCGACGTGGCGCGGCAGCTGCAGCGGGTTGAGGTGTCGTTTTCTTCGTTCTCGACATCGCTGAGGACG GGAGGAGTTGTTAGTTCGAAGAAGAGCGTCAGAGGGAGTGTGACGATTGTGGATTATGGGCATGATGAAGTTGCTATGTCTCCTGAACCAGAAGGTGAAT TTGATGCAATCCCAGAACATACGTCTCCAGGAACTAGTCAGGCCATTGTAACTCCCCAACCAACTGATCATACTGAACAAGCACAGTCGGATTATGTAAA TAATAGCATTTCTGAATCAGAAGATGTGAAGGTGGAGGAGCCAACTGGTCCTCCTGAGGGGAAGACTGATCTACTGGATAAATTCTTACCCCCTCCACCA GAAGAGAAGTGCTCACTAGAATTGCAAAATAAAATATCAAAGTTCATCTCTTTGAAGAAAGTAGGTAGAAGTTTCAATGCAGAAGTCCGCAATAGGAAGG ATTATCGGAACCCTGATTTCTTACAGCATGCAGTGAATTATCAGGGTATCGACCACATAGGGACTTGCTTCAGTAAAGATGTCTTTGACCCCCATGGATA TGACATGAGCGACTTCTATAATGAAATAGGCTAG
AA sequence Show only first row Show all	>Lus10029236 pacid=23139949 polypeptide=Lus10029236 locus=Lus10029236.g ID=Lus10029236.BGIv1.0 annot-version=v1.0 MASRKKQSEGIALLSMYSDEDDEEMEELGEGDAEMQRREQEQQPEGSGGDNPESNHMEEDLTNDAMVTDEYGDGGEQTDVARQLQRVEVSFSSFSTSLRT GGVVSSKKSVRGSVTIVDYGHDEVAMSPEPEGEFDAIPEHTSPGTSQAIVTPQPTDHTEQAQSDYVNNSISESEDVKVEEPTGPPEGKTDLLDKFLPPPP EEKCSLELQNKISKFISLKKVGRSFNAEVRNRKDYRNPDFLQHAVNYQGIDHIGTCFSKDVFDPHGYDMSDFYNEIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29220			transcriptional regulator fami...		Lus10029236 [exp]	0	1
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Lus10026766 [exp]	10.5	0.8043
AT4G32360			Pyridine nucleotide-disulphide...		Lus10015217 [exp]	15.2	0.7543
AT1G22960			Pentatricopeptide repeat (PPR)...		Lus10034616 [exp]	17.0	0.7823
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10024327 [exp]	17.5	0.7867
AT5G49930		EMB1441	embryo defective 1441, zinc kn...		Lus10017099 [exp]	21.4	0.7565
AT1G55150			DEA(D/H)-box RNA helicase fami...		Lus10037646 [exp]	28.2	0.7619
AT1G60670			Protein of unknown function (D...		Lus10030566 [exp]	32.5	0.7137
AT3G09320			DHHC-type zinc finger family p...		Lus10024377 [exp]	36.5	0.6792
AT3G58580			DNAse I-like superfamily prote...		Lus10015981 [exp]	39.5	0.7357
AT2G41020			WW domain-containing protein (...		Lus10038992 [exp]	40.7	0.7399

Compare expression of checked genes

Lus10029236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.