Plant FIBer expression Database

Lus10029237 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G29220 75 / 2e-16 transcriptional regulator family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007288
[exp]
156 / 8e-47 AT1G29220 217 / 2e-67 transcriptional regulator family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G068100
[exp]
105 / 2e-27 AT1G29220 262 / 1e-84 transcriptional regulator family protein (.1.2)
Potri.004G058700
[exp]
96 / 1e-23 AT1G29220 197 / 1e-59 transcriptional regulator family protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10029237 pacid=23139932 polypeptide=Lus10029237 locus=Lus10029237.g ID=Lus10029237.BGIv1.0 annot-version=v1.0
ATGGAAGCAAAACTTGTCAGACTGTCTAGCCTAATGGCCGTCTTTCTTGTTTTTGAAACAGAGGCTGATTTTCGGCGAGACAGGGAAAGAAGGGAGCAAG
AATTGAAAAGAAGCCCTAAGGTAGAGTTTGTTCCAGGTGGAACTCAGCCTGGAATGGTGGTGCCTCAGTCAATATTCAGCATGCCTATACCAGTTGCTGC
TAGTGGATTGCCACCGGCACCCGTTCCGGCCGAAACTGGTTCACGAGACGGTAGGCAGAACAAGAAGTCGAAATGGGACAAGGTAGACGGTGATGGTAGG
AATCCCCTCCCGGTCGGCAGTCAAGATTCCTTAGCCACCGCAGCAGCCGCTCATGCTGCCCTTCTCTCCGCTACTAACGCTGGTGCCGGATATCCAGCTT
TCGTAAACGACGGGAGGCGGAAGAGAGGAGATCCGGCGAGCGAAGGACTGACAGAAGATCTTGAAACCTTTCTCGACTGA
AA sequence
>Lus10029237 pacid=23139932 polypeptide=Lus10029237 locus=Lus10029237.g ID=Lus10029237.BGIv1.0 annot-version=v1.0
MEAKLVRLSSLMAVFLVFETEADFRRDRERREQELKRSPKVEFVPGGTQPGMVVPQSIFSMPIPVAASGLPPAPVPAETGSRDGRQNKKSKWDKVDGDGR
NPLPVGSQDSLATAAAAHAALLSATNAGAGYPAFVNDGRRKRGDPASEGLTEDLETFLD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G29220 transcriptional regulator fami... Lus10029237
[exp]
0 1
AT1G70350 unknown protein Lus10029157
[exp]
6.6 0.8567
AT3G12130 C3HZnF KH domain-containing protein /... Lus10012017
[exp]
13.5 0.8591
AT5G46160 Ribosomal protein L14p/L23e fa... Lus10038513
[exp]
28.7 0.8528
AT2G44065 Ribosomal protein L2 family (.... Lus10001572
[exp]
33.5 0.8537
AT3G02280 Flavodoxin family protein (.1) Lus10017589
[exp]
41.2 0.8196
AT5G57370 unknown protein Lus10001311
[exp]
41.6 0.8506
AT2G27730 copper ion binding (.1) Lus10020624
[exp]
45.5 0.8442
AT5G22040 unknown protein Lus10008373
[exp]
46.2 0.8456
AT4G32430 Pentatricopeptide repeat (PPR)... Lus10021355
[exp]
47.7 0.8472
AT1G11480 eukaryotic translation initiat... Lus10018497
[exp]
58.4 0.8382

Lus10029237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.