Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29200 698 / 0 O-fucosyltransferase family protein (.1.2.3) AT1G62330 559 / 0 O-fucosyltransferase family protein (.1) AT1G11990 526 / 0 O-fucosyltransferase family protein (.1) AT2G01480 314 / 1e-99 O-fucosyltransferase family protein (.1) AT5G65470 305 / 4e-97 O-fucosyltransferase family protein (.1) AT1G14970 305 / 4e-96 O-fucosyltransferase family protein (.1) AT3G26370 291 / 7e-91 O-fucosyltransferase family protein (.1) AT1G35510 288 / 9e-90 O-fucosyltransferase family protein (.1) AT4G38390 287 / 1e-89 RHS17 root hair specific 17 (.1) AT1G38131 287 / 4e-89 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007290 [exp] 1167 / 0 AT1G29200 699 / 0.0 O-fucosyltransferase family protein (.1.2.3) Lus10015558 [exp] 525 / 0 AT1G62330 733 / 0.0 O-fucosyltransferase family protein (.1) Lus10003715 [exp] 311 / 3e-98 AT2G01480 897 / 0.0 O-fucosyltransferase family protein (.1) Lus10013460 [exp] 309 / 5e-98 AT2G01480 868 / 0.0 O-fucosyltransferase family protein (.1) Lus10012732 [exp] 301 / 4e-95 AT5G65470 765 / 0.0 O-fucosyltransferase family protein (.1) Lus10034606 [exp] 301 / 2e-94 AT2G01480 848 / 0.0 O-fucosyltransferase family protein (.1) Lus10002653 [exp] 299 / 2e-94 AT5G65470 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10021790 [exp] 294 / 4e-92 AT2G01480 838 / 0.0 O-fucosyltransferase family protein (.1) Lus10009276 [exp] 291 / 3e-91 AT4G24530 801 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G068300 [exp] 830 / 0 AT1G29200 737 / 0.0 O-fucosyltransferase family protein (.1.2.3) Potri.004G058900 [exp] 822 / 0 AT1G29200 687 / 0.0 O-fucosyltransferase family protein (.1.2.3) Potri.011G010600 [exp] 574 / 0 AT1G62330 714 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G005100 [exp] 568 / 0 AT1G62330 709 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 307 / 6e-97 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1) Potri.007G011000 [exp] 303 / 4e-96 AT5G65470 784 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 305 / 5e-96 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G087300 [exp] 299 / 1e-93 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G185200 [exp] 290 / 1e-90 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G048500 [exp] 288 / 4e-90 AT3G26370 893 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10029239 pacid=23139965 polypeptide=Lus10029239 locus=Lus10029239.g ID=Lus10029239.BGIv1.0 annot-version=v1.0 ATGAAGGATTATCAGACAAGAAGTTCAGAATTAGGGTTCGCAGGAAATGATCCTTCTTTAGGTAGGAGGTTGTCTGGTAAGGGCTTGAGAAATGATGAAC AGCTGGGGAAGAGTGGTTCTGCTAAGGGATCATCTTATGTTGGGAAAAGGAATTCCTTGTTCAGCAAGCATGTCAAGTCCATTGCCAGGATGCTGGCTTT TGTTGGGTTTCTTTTCATGATTGATTCCTTCTTGGTGTCTGTTTTCGATTCGTTAAGACTTCAACACAATTCGAAACAGGATCATGAGGATCATGCTGCT TACCCTGTCGAATCAAACCGACCGGTTCAGATGTATGGTCGACTCGTAAACATGGCCTCCAATGCACTTGCAGAGAAAGAGTTTGAGCAAGATACAAGAT TCTGGAGGGAGCTGCATTCGAAGAAAGCACTCGAATGCAAACCTTGTGCGGATCGAAAAGTTTCAAACAAACCAGGAAGAGTTGCGAAAAGTAACGGTTA CATAATGGTGAGTGCAAATGGCGGTCTCAACCAACAAAGAGTTGCTATTTGCAATGCTGTTGCAGTGGCGTCTTTACTCAACGCTACCCTAGTTCTTCCG ACATTTCTCTACAGCAATGTCTGGAAGGATCCGAGCCAGTTTGGTGATATCTACCAGGAGAAACATTTCTTCGAGATGATGGAAGATGAAGTCGATATAG TAAAAGAACTTCCGGATCGTTTCAAGTCTTTAGACATTGAAGCAATTGGCAGCGTGATTACTGATTCTGACTTGCCAAAAGAAGCTACTCCTGGAGATTA TCATGAGAAGGTGCTTCCAGTTCTGCTTCGAAACGGAGTTGTTCACTTGCTCGGTTATGGAAACCGGCTTGGCTTTGATCCATTGCCATCTGAAATCCAG AGATTAAGGTGCAAATGTAACTTCCACGCGTTGAAGTTTGTTCCGAAAATCCAAGAAGTCGGCTCGTTGTTGATCCAAAGGATAAGAAGATACGAAGCTA CACCCAGTACGTTGGACAAACAACGTCTTGGAGAATACGCGTCCAACGTTCCCTCAAATCCACAAGATGAAACGAGACGGCCATTGAAGTATCTGGCTCT TCACTTGAGGTTCGAGATCGATATGATAGCCTACTCTCTATGCGATTTTGGAGGTGGACCGATTGAGAAGCGGGAACTTCAGGCTTATAGAGAGAGCCAT TTCCCTCTGCTCATCGAACGCTTGAAAAAATCGAAACTGATATCGACAGAAGAGATGAGAAAGACAGGTAAGTGCCCCTTGACACCAGAGGAAGCCGGAC TAGTCCTTGCTGGCCTAGGATTCAAGAGAGGGACTCATATCTACCTTGCCGGGTCCCAAGTCTATGGAGGAAGCTCAAGAATGCAGCCATATGTTAGCCT TTACCCAAACTTGCTCACCAAAGAAACTCTCCTCACTCCTGCTGAACTTGAACCTTTCAGGAATTTCTCCTCACAGCTGGCTGCATTGGACCTGATCGCA TGTACGAGTGCAGACGTGTTTGCCATGACCGATTCAGGAAGCCAATTGGCGTCGTTAGTGTCAGGGTTCAGGACTTACTATGGGGGTGGGAACGCTCCCA CCCTACGGCCAAACAAGAAGAGACTAGCTGCAATTTTGTACAAGAACAACACGATACCATGGAAAGGTTTTGAAGAGAGAGTGAGGCGTATGATCGAAGA AGGCCAAAGGGCAAGAACTAGGCGATATGGTCGAAGCATTTATCGACAGCCTCGATGTCCAGAGTGCATGTGTAGTAGTAGTAGTAGCAGTGATTCTCAC TAG
AA sequence Show only first row Show all	>Lus10029239 pacid=23139965 polypeptide=Lus10029239 locus=Lus10029239.g ID=Lus10029239.BGIv1.0 annot-version=v1.0 MKDYQTRSSELGFAGNDPSLGRRLSGKGLRNDEQLGKSGSAKGSSYVGKRNSLFSKHVKSIARMLAFVGFLFMIDSFLVSVFDSLRLQHNSKQDHEDHAA YPVESNRPVQMYGRLVNMASNALAEKEFEQDTRFWRELHSKKALECKPCADRKVSNKPGRVAKSNGYIMVSANGGLNQQRVAICNAVAVASLLNATLVLP TFLYSNVWKDPSQFGDIYQEKHFFEMMEDEVDIVKELPDRFKSLDIEAIGSVITDSDLPKEATPGDYHEKVLPVLLRNGVVHLLGYGNRLGFDPLPSEIQ RLRCKCNFHALKFVPKIQEVGSLLIQRIRRYEATPSTLDKQRLGEYASNVPSNPQDETRRPLKYLALHLRFEIDMIAYSLCDFGGGPIEKRELQAYRESH FPLLIERLKKSKLISTEEMRKTGKCPLTPEEAGLVLAGLGFKRGTHIYLAGSQVYGGSSRMQPYVSLYPNLLTKETLLTPAELEPFRNFSSQLAALDLIA CTSADVFAMTDSGSQLASLVSGFRTYYGGGNAPTLRPNKKRLAAILYKNNTIPWKGFEERVRRMIEEGQRARTRRYGRSIYRQPRCPECMCSSSSSSDSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29200			O-fucosyltransferase family pr...		Lus10029239 [exp]	0	1
AT1G29200			O-fucosyltransferase family pr...		Lus10007290 [exp]	1.0	0.9776
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10015212 [exp]	2.0	0.9448
AT3G48770			DNA binding;ATP binding (.1)		Lus10004567 [exp]	2.6	0.9282
AT1G20550			O-fucosyltransferase family pr...		Lus10014444 [exp]	2.8	0.9226
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10021637 [exp]	3.2	0.9338
AT5G50130			NAD(P)-binding Rossmann-fold s...		Lus10042088 [exp]	4.2	0.9334
AT5G55970			RING/U-box superfamily protein...		Lus10022567 [exp]	8.5	0.9409
AT4G14760			kinase interacting (KIP1-like)...		Lus10041192 [exp]	8.8	0.9099
AT5G42710			unknown protein		Lus10016315 [exp]	8.9	0.9372
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10043387 [exp]	9.3	0.8861

Compare expression of checked genes

Lus10029239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.