Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45780 680 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G25560 528 / 0 NIK2 NSP-interacting kinase 2 (.1.2.3) AT1G60800 518 / 2e-178 NIK3 NSP-interacting kinase 3 (.1) AT5G16000 505 / 2e-173 NIK1 NSP-interacting kinase 1 (.1) AT2G23950 484 / 3e-165 Leucine-rich repeat protein kinase family protein (.1) AT4G30520 470 / 2e-159 SARK SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1) AT4G33430 434 / 5e-146 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT1G71830 434 / 6e-146 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT2G13790 417 / 3e-139 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT1G34210 413 / 2e-137 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007292 [exp] 1035 / 0 AT5G45780 801 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030591 [exp] 530 / 0 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10030898 [exp] 528 / 0 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10034350 [exp] 515 / 2e-177 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1) Lus10005103 [exp] 512 / 6e-176 AT5G16000 998 / 0.0 NSP-interacting kinase 1 (.1) Lus10019145 [exp] 497 / 3e-170 AT5G16000 935 / 0.0 NSP-interacting kinase 1 (.1) Lus10034413 [exp] 495 / 2e-169 AT5G16000 937 / 0.0 NSP-interacting kinase 1 (.1) Lus10019963 [exp] 484 / 1e-164 AT2G23950 907 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015484 [exp] 474 / 4e-161 AT2G23950 910 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G059100 [exp] 819 / 0 AT5G45780 837 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G068700 [exp] 808 / 0 AT5G45780 819 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G043200 [exp] 540 / 0 AT1G60800 925 / 0.0 NSP-interacting kinase 3 (.1) Potri.008G188800 [exp] 538 / 0 AT1G60800 930 / 0.0 NSP-interacting kinase 3 (.1) Potri.017G108000 [exp] 535 / 0 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.004G108200 [exp] 533 / 0 AT5G16000 1006 / 0.0 NSP-interacting kinase 1 (.1) Potri.008G110300 [exp] 524 / 0 AT3G25560 918 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.010G134100 [exp] 519 / 7e-179 AT3G25560 927 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.006G179400 [exp] 488 / 2e-166 AT2G23950 889 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G101300 [exp] 481 / 9e-164 AT4G30520 837 / 0.0 SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10029241 pacid=23139967 polypeptide=Lus10029241 locus=Lus10029241.g ID=Lus10029241.BGIv1.0 annot-version=v1.0 ATGGCGATGAAGAAGGAGATGAAGGATGAGAAAGGTGTAATGGCGGGGTGGGGTTTGAACTCCGTTGATCCCTGCACTTGGAACATGGTCGGCTGTTCTC CAGAAGGGGTTGTTGTTTCTTTGGAAATGGCAAGCACGGGATTGTCTGGGACACTATCCAGCAGTGTTGGGAACTTGAATCACTTGAGAACAATGCTATT GCAGAATAATTTGCTAGCTGGGTCAATTCCAGCTGAGATAGGAAGGCTCTCTGAGCTTCAAACTCTTGACCTGTCCGGCAACCAATTTGAAGGCTACATT CCAACCGATTTGGGACTTTTGAGTCGTCTAACTTACTTGCGGCTTAGCAGAAACAAATTATCCGGGCAGATTCCGGGACTAGTTGCTAATCTCACTGGAC TCTCATTCTTCATCACAGGGAATAGTCTTCTTTGCGGTGTGTCATCGACGAAGGGATGTTCGGGTGTCTTGAAGCCGGTGAATGAAACAGTTACCTCGCC GAAAGCCAGCAACCACCAGCATTGGTGGCTGGCTGTTGTCTTGGGATTCAGTTGTACATTTGTAGTGTCTCTAATCCTACTTGTTTGCTGGGTGAATTGG TACCGGACCCGTCTACTCTCTACTTCATGTGTGCAGCAGGACTACGATTTCGAAATCGGTCATCTGAAGAGATTCTCGTTTCGCGAGCTGCAAATTGCTA CAGGGAACTTTAGTTCGAGGAACGTCCTTGGTCAAGGAGGGTTTGGCGTTGTCTATAGAGGTTGCTTGCCAAACAAGACGTTGGTGGCAGTTAAGAGACT CAAGGATCCGAACTACACCGGGGAAATGCAGTTCCAGACCGAGGTGGAAATGATTGGATTGGCCTTGCATCGAAACCTCCTGCGTTTGTACGGGTTCTGT ATGACACCTGAGGAAAGGATGCTCGTGTATCCTTATATGCCGAATGGGAGTGCAGCTGATCGATTGCGAGAGACATTTGGTGACAGGCCATGTTTGAGTT GGAACAGAAGGATCCGAATCGCACTAGGGGCTGCGCGAGGGCTGCTCTACTTGCACGAGCAATGCAATCCTCGAATCATTCACAGGGACGTCAAGGCTGC AAACATACTACTGGACGAGAGTTTCGAAGCTGTTGTGGGAGATTTCGGCCTCGCCAAACTGTTGGACCGAATGGACTCCCATGTCACGACTGCGGTACGT GGCACAATCGGACACATTGCACCGGAGTATCTCTCGACCGGCCAGTCCTCCGAAAAGACTGATGTCTTTGGATTTGGCATCCTGCTTTTGGAACTCATCA CAGGTCAGAAGGCATTGGATGCTGGAAATGGTCAGGTCCAGAAAGGCATGATCCTTGACTGGGTGAAAACCTTATTCGAGGAGAAAAGGCTAGAGATGCT AATAGACAGAGATCTCAAGGGATGTTTCGAATTGTCGGAGCTCAAAACAGCAGTAGAATTAGCACTACAATGCACTCAATCACATCCGGCTCTCCGGCCT AAGATGTCAGAAGTGTTGAAGGTCCTCGACGGTCTCGTAGGTCAGTCAGTCATCGAAGAACCGCAATCCGGAGTAGGATTTCCATCATCAAGCACACAGA ACGAGGTAGCAGTAGGGCCTTTCAGTTTCTCTAGGCATCACAATGACATCCGAGAAGAATCTTCGTTCATCATGGAAGCCATGGAGCTTTCCGGCCCTCG ATGA
AA sequence Show only first row Show all	>Lus10029241 pacid=23139967 polypeptide=Lus10029241 locus=Lus10029241.g ID=Lus10029241.BGIv1.0 annot-version=v1.0 MAMKKEMKDEKGVMAGWGLNSVDPCTWNMVGCSPEGVVVSLEMASTGLSGTLSSSVGNLNHLRTMLLQNNLLAGSIPAEIGRLSELQTLDLSGNQFEGYI PTDLGLLSRLTYLRLSRNKLSGQIPGLVANLTGLSFFITGNSLLCGVSSTKGCSGVLKPVNETVTSPKASNHQHWWLAVVLGFSCTFVVSLILLVCWVNW YRTRLLSTSCVQQDYDFEIGHLKRFSFRELQIATGNFSSRNVLGQGGFGVVYRGCLPNKTLVAVKRLKDPNYTGEMQFQTEVEMIGLALHRNLLRLYGFC MTPEERMLVYPYMPNGSAADRLRETFGDRPCLSWNRRIRIALGAARGLLYLHEQCNPRIIHRDVKAANILLDESFEAVVGDFGLAKLLDRMDSHVTTAVR GTIGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDAGNGQVQKGMILDWVKTLFEEKRLEMLIDRDLKGCFELSELKTAVELALQCTQSHPALRP KMSEVLKVLDGLVGQSVIEEPQSGVGFPSSSTQNEVAVGPFSFSRHHNDIREESSFIMEAMELSGPR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45780			Leucine-rich repeat protein ki...		Lus10029241 [exp]	0	1
AT5G18540			unknown protein		Lus10002878 [exp]	6.8	0.8352
AT5G04490		VTE5	vitamin E pathway gene 5 (.1)		Lus10017447 [exp]	8.5	0.7828
					Lus10032698 [exp]	10.0	0.8156
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Lus10029688 [exp]	10.5	0.7866
AT3G30280			HXXXD-type acyl-transferase fa...		Lus10034600 [exp]	10.7	0.7526
AT2G45520			unknown protein		Lus10015859 [exp]	12.1	0.8223
AT5G63040			unknown protein		Lus10039957 [exp]	12.4	0.7770
AT1G26180			unknown protein		Lus10031917 [exp]	14.5	0.7684
AT5G45780			Leucine-rich repeat protein ki...		Lus10007292 [exp]	14.5	0.7610
AT4G10090		ELP6	elongator protein 6 (.1)		Lus10040357 [exp]	15.8	0.7955

Compare expression of checked genes

Lus10029241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.