Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05830 101 / 3e-26 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G34200 100 / 1e-25 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G59000 95 / 1e-23 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 94 / 1e-23 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT2G37950 89 / 2e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G03180 57 / 2e-09 RING/U-box superfamily protein (.1.2) AT5G63780 56 / 7e-09 SHA1 shoot apical meristem arrest 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G08750 55 / 1e-08 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) AT5G60580 55 / 1e-08 RING/U-box superfamily protein (.1.2.3.4) AT5G18760 54 / 2e-08 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007293 [exp] 455 / 1e-164 AT2G34200 103 / 6e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10015273 [exp] 194 / 4e-61 AT2G34200 106 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040240 [exp] 106 / 5e-28 AT5G05830 187 / 4e-60 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10028249 [exp] 106 / 6e-28 AT5G05830 184 / 8e-59 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017197 [exp] 105 / 5e-27 AT5G05830 182 / 1e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10021113 [exp] 102 / 2e-26 AT5G05830 167 / 7e-53 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10027744 [exp] 99 / 9e-25 AT5G05830 162 / 8e-50 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10035549 [exp] 99 / 1e-24 AT5G05830 157 / 4e-48 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10016451 [exp] 90 / 5e-22 AT5G05830 164 / 1e-51 RING/FYVE/PHD zinc finger superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G059200 [exp] 170 / 8e-51 AT5G05830 107 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G068800 [exp] 168 / 4e-50 AT5G05830 91 / 4e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G094000 [exp] 107 / 2e-28 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G062600 [exp] 105 / 8e-28 AT5G05830 211 / 7e-70 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G105900 [exp] 106 / 9e-28 AT5G05830 191 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G195100 [exp] 101 / 3e-26 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G246700 [exp] 90 / 6e-22 AT5G59000 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.009G039700 [exp] 89 / 1e-21 AT5G05830 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G129000 [exp] 55 / 1e-08 AT3G09760 381 / 7e-128 RING/U-box superfamily protein (.1) Potri.009G013300 [exp] 55 / 2e-08 AT5G60580 492 / 3e-171 RING/U-box superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10029242 pacid=23139877 polypeptide=Lus10029242 locus=Lus10029242.g ID=Lus10029242.BGIv1.0 annot-version=v1.0 ATGGAGGAAGAGAAAGCTGCTGGGGATTCGGGTCTACGTAACGGAATTGGTTTGGAGATAGTCAACAAACCGTTAGATTCAGGAAAGGCGGAGAATTTGG ACAGGAAAGGAGAGGATTTGCCGTCGAGTGTCGGCTTGGCAAATGATCGAACAGGTGGTGTGCAAGGAAATGGCGAGAGCTCGAACGAGGGTAGTACGGT AATTTTGATCAATTTGAATGTTGATGAGGCGAAACTACTGCCGAAAGGGGGTGATTATAAGGAACAGCTGTCGTGTGTGATTGATGTTAAGTGCTGTAAG GATAGCTGGGATGGTGATGTGGTTTGCAGGATCTGTCATTTGGGTTCTGAAGGGTCGATAGAAGGAGTAAGTAGTGCTGATCATCCTAGTGGTGGTGTTA GTGGGAGTTCCATGGAGCTCATTCAGCTTGGATGTGGGTGTAAAGATGAGCTTGGTGTTGCTCATCCTCATTGTGCTGAAGCCTGGTTCAAGCTTAAAGG AAACAGAGTGTGTGAAATCTGCGGGGAGGCGGCGAAGAACATCACAGGCATTGTTGTCGACAGAGACAGAATCCTGGATGCGTTGAACCACGTCAGATTA AACCAAGCAGGCGCCGCGGCTTACAACACCGCAGAGAGTCGGCGAGGAGGATGTTGGAAGGGACAACCTTTCTGCAACTTCCTGATGGCTTGTCTGGTGA TCGCTTTCGTGCTGCCATGGTTTTTCCGTGTAAATATGTTCTGA
AA sequence Show only first row Show all	>Lus10029242 pacid=23139877 polypeptide=Lus10029242 locus=Lus10029242.g ID=Lus10029242.BGIv1.0 annot-version=v1.0 MEEEKAAGDSGLRNGIGLEIVNKPLDSGKAENLDRKGEDLPSSVGLANDRTGGVQGNGESSNEGSTVILINLNVDEAKLLPKGGDYKEQLSCVIDVKCCK DSWDGDVVCRICHLGSEGSIEGVSSADHPSGGVSGSSMELIQLGCGCKDELGVAHPHCAEAWFKLKGNRVCEICGEAAKNITGIVVDRDRILDALNHVRL NQAGAAAYNTAESRRGGCWKGQPFCNFLMACLVIAFVLPWFFRVNMF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10029242 [exp]	0	1
AT1G36310			S-adenosyl-L-methionine-depend...		Lus10023545 [exp]	1.7	0.9074
AT3G01170			Ribosomal protein L34e superfa...		Lus10030686 [exp]	2.0	0.9068
AT2G02870			Galactose oxidase/kelch repeat...		Lus10030489 [exp]	4.9	0.8807
AT4G15940			Fumarylacetoacetate (FAA) hydr...		Lus10006496 [exp]	11.2	0.9016
AT4G13270			Late embryogenesis abundant (L...		Lus10011095 [exp]	11.4	0.8484
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Lus10001237 [exp]	14.5	0.8872
AT4G31130			Protein of unknown function (D...		Lus10026052 [exp]	15.2	0.8990
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10042014 [exp]	29.2	0.8804
AT3G07870			F-box and associated interacti...		Lus10006403 [exp]	29.6	0.8475
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Lus10011336 [exp]	33.0	0.8761

Compare expression of checked genes

Lus10029242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.