Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18760 124 / 1e-34 AtRLP51 receptor like protein 51 (.1) AT5G45770 97 / 2e-24 AtRLP55 receptor like protein 55 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007294 [exp] 164 / 7e-50 AT4G18760 391 / 1e-133 receptor like protein 51 (.1) Lus10005430 [exp] 135 / 2e-40 AT4G18760 293 / 3e-98 receptor like protein 51 (.1) Lus10015226 [exp] 131 / 4e-37 AT4G18760 401 / 2e-137 receptor like protein 51 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G059500 [exp] 123 / 5e-34 AT4G18760 375 / 7e-127 receptor like protein 51 (.1) Potri.011G069500 [exp] 119 / 1e-32 AT4G18760 375 / 4e-127 receptor like protein 51 (.1) Potri.008G211800 [exp] 39 / 0.0005 AT2G42800 474 / 7e-166 receptor like protein 29 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029243 pacid=23139887 polypeptide=Lus10029243 locus=Lus10029243.g ID=Lus10029243.BGIv1.0 annot-version=v1.0 ATGATGCATCTGAAACATTTGAACCTCCCCGACAATGCGTTCCACGGCGTTTTGCCTTTCAATCTCACGTTTCTGAAGACATTAGAAGTTTTCAAAATCG GGGGGAATGACCATCTGTGTTACAACCGTACGGCATTTTCGTCGTCGAAGATGAAGCCTGGGATAGCTCCTTGCGACAAGCAAGGGTTGCCGATGTCGCC GCCGCCGTCGAAGGATATGACTTCGGACGGAGGCGGCGGCGATGATGGCGATTCGTCGGATTACGACGACGGAGAGGACAGCAGTTCGAGTGGGAAGAAG GAAGAGCATCATCATGGGCCGAACAAGGTTGTTCTTGGTATCGCCATTGCTTTGTCTTCCATTGTTTTTCTCATCGTCTTCCTTATTCTTCTGTCGAAGA GATGCACTTAA
AA sequence Show only first row Show all	>Lus10029243 pacid=23139887 polypeptide=Lus10029243 locus=Lus10029243.g ID=Lus10029243.BGIv1.0 annot-version=v1.0 MMHLKHLNLPDNAFHGVLPFNLTFLKTLEVFKIGGNDHLCYNRTAFSSSKMKPGIAPCDKQGLPMSPPPSKDMTSDGGGGDDGDSSDYDDGEDSSSSGKK EEHHHGPNKVVLGIAIALSSIVFLIVFLILLSKRCT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10029243 [exp]	0	1
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10007294 [exp]	4.2	0.9172
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Lus10014358 [exp]	10.5	0.8803
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10039231 [exp]	10.7	0.8907
AT5G59510		RTFL5, DVL18	DEVIL 18, ROTUNDIFOLIA like 5 ...		Lus10040784 [exp]	12.6	0.8436
AT3G14240			Subtilase family protein (.1)		Lus10013187 [exp]	14.7	0.8839
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10016254 [exp]	15.2	0.8704
AT1G05420	OFP	ATOFP12, OFP12	ARABIDOPSIS THALIANA OVATE FAM...		Lus10014677 [exp]	19.2	0.8880
AT2G04480			unknown protein		Lus10032584 [exp]	19.3	0.8798
					Lus10016903 [exp]	22.6	0.8742
AT1G71990		ATFT4, ATFUT13,...	ARABIDOPSIS FUCOSYLTRANSFERASE...		Lus10006076 [exp]	24.7	0.8732

Compare expression of checked genes

Lus10029243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.