Plant FIBer expression Database

Lus10029244 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G24880 515 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007295
[exp]
656 / 0 AT4G24880 451 / 6e-158 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G095400
[exp]
554 / 0 AT4G24880 603 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10029244 pacid=23139865 polypeptide=Lus10029244 locus=Lus10029244.g ID=Lus10029244.BGIv1.0 annot-version=v1.0
ATGGCGCCACCCGATTCCCGCCGGCCGTTCAAAAGAGCGACGGTCTCCGATCAACAGAGGCGCCGAGAGCTAACCTTACAGAGGCAATCTCAGAGCCGAC
ATGATGCTCAGCAGCGAGCAAGAAGCTTGGCATCGACCATTCTCTCTCTTCCGGAACCCGATGCTGTACTCCAATCAGACCCGATGGATTCTCAAGCTCC
GCCGGATGTCCGTCGGAAGTCAAAGTCGAGAGCTTCAGAAGTTCGCAAGTCATTCGCTAGCCAGCTAATGCTTCCCGAATGGATGATTGACATTCCTGAT
CGCTTGAGCCAAGATTGGTACGTCTTTGCCAGACCCGCCGGAAAACGTTGTTTCGTCGTTGCCTCTAACGGAACGACGGTTAGTAGAGAACGGAACGGCT
CAATCCTACACAATTTCCCATCTGCTTTGCCTAATGGAGCAAAGACGAGACAGCCATCAGGGCCTGCGCATTCCTACTCCATTCTGGACTGCATATTTCA
TGAGGTTGATCAAACATATTATGTCATTGACATGGTTTGCTATGGAAGCCACTCGCTCTATGACTGTACAGCTGAGTTCAGGTTCTTTTGGTTGAAACCC
AAGCTCGAGGAGACCGGGGCTTCTGCCTCTCCGTCTTATCATCACAAATACAAATTCTGCACAGTCCCAATTTACGAATGTGATCAGAAAGGTCTGATTG
CAGCTTATGAAGGAAAAACGCCTTATGTCAAAGACGGTTTGCTGTTCTACAACAAGCATTCACATTATCAGCACGGGAGTACACCGCTAGCATTAGTCTG
GAAGGATGACAAATGCAGTCAATATGTCATTGACACAGACAGCGCAGGACAAGTTCCAAACCAGCAACTGGTGGTCTTGGAACTAAAAGAAGATGGAAGT
CTAACTACATCAGATGATCCACCTGTCGTCTTTGGCAACCTGAATCCAGAATTCGTACAACAGTCAGCGCTGCGACCAGGAAATCTCTTACGATTCTCTG
TTAATGATGGAGGGTTAAGCTTCGTGGACGGGAAGCTTGAGAAAGCAGATATTCAGTATCTCGGGAAATCCAATCGAGCGCGTGCGTTTGCAGATAGTTT
CTCTAAGGTTATGTTTCAGCATATGGTCAGGCATTCTCCTCTGAAGTTTGATGATCTACTAGCAGCTGTTTGTTCGTCGGAAAATGAGCAAAAAGTACAT
CCAGATGTCGAGATGTCTGGTTGA
AA sequence
>Lus10029244 pacid=23139865 polypeptide=Lus10029244 locus=Lus10029244.g ID=Lus10029244.BGIv1.0 annot-version=v1.0
MAPPDSRRPFKRATVSDQQRRRELTLQRQSQSRHDAQQRARSLASTILSLPEPDAVLQSDPMDSQAPPDVRRKSKSRASEVRKSFASQLMLPEWMIDIPD
RLSQDWYVFARPAGKRCFVVASNGTTVSRERNGSILHNFPSALPNGAKTRQPSGPAHSYSILDCIFHEVDQTYYVIDMVCYGSHSLYDCTAEFRFFWLKP
KLEETGASASPSYHHKYKFCTVPIYECDQKGLIAAYEGKTPYVKDGLLFYNKHSHYQHGSTPLALVWKDDKCSQYVIDTDSAGQVPNQQLVVLELKEDGS
LTTSDDPPVVFGNLNPEFVQQSALRPGNLLRFSVNDGGLSFVDGKLEKADIQYLGKSNRARAFADSFSKVMFQHMVRHSPLKFDDLLAAVCSSENEQKVH
PDVEMSG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G24880 unknown protein Lus10029244
[exp]
0 1
AT4G03000 RING/U-box superfamily protein... Lus10041245
[exp]
10.9 0.7345
AT4G03000 RING/U-box superfamily protein... Lus10041244
[exp]
11.9 0.7285
AT5G56660 ILL2 IAA-leucine resistant (ILR)-li... Lus10029200
[exp]
20.1 0.6151
AT5G51280 DEAD-box protein abstrakt, put... Lus10008856
[exp]
21.2 0.6582
AT2G02360 ATPP2-B10 phloem protein 2-B10 (.1) Lus10007926
[exp]
22.2 0.7168
AT5G02620 ATANK1, ANK1 ankyrin-like1 (.1) Lus10025288
[exp]
22.4 0.6934
AT4G03000 RING/U-box superfamily protein... Lus10021953
[exp]
23.9 0.6795
AT4G00755 F-box family protein (.1.2) Lus10036561
[exp]
29.6 0.6660
AT1G22730 MA3 domain-containing protein ... Lus10011324
[exp]
32.2 0.7085
AT5G14540 Protein of unknown function (D... Lus10018089
[exp]
32.3 0.6614

Lus10029244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.