Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45760 464 / 2e-164 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G61210 60 / 2e-09 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 55 / 7e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 47 / 2e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 45 / 8e-05 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G16780 44 / 9e-05 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007297 [exp] 683 / 0 AT5G45760 488 / 4e-173 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10018458 [exp] 52 / 5e-07 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 52 / 6e-07 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 47 / 2e-05 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10014674 [exp] 44 / 0.0002 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 43 / 0.0003 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10013452 [exp] 43 / 0.0004 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10037525 [exp] 42 / 0.0006 AT1G52360 513 / 3e-176 Coatomer, beta' subunit (.1.2) Lus10000495 [exp] 42 / 0.0009 AT1G04140 914 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G069700 [exp] 505 / 3e-180 AT5G45760 476 / 4e-169 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.019G087200 [exp] 50 / 1e-06 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.008G002300 [exp] 49 / 3e-06 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 48 / 9e-06 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 46 / 3e-05 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G051900 [exp] 41 / 0.0008 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10029246 pacid=23139820 polypeptide=Lus10029246 locus=Lus10029246.g ID=Lus10029246.BGIv1.0 annot-version=v1.0 ATGACGGAGCCCAGAAAGCTGAGAGGACACAAAGCCACCGCCACGTGCTGCATAGCCTCGCGAGACCGTCCTGGAATCGTCGTCACCTCCGGCGAGGATG GCCGTGTTTGCTGGTTCGATATGCGATGCAAAGAGGTGCAGTTTGTTATGGAGGTCGGAAAAGAACCTATTTCGTCATTGTGCTTCAAGCCAGGAAGTGA AGATATCCTCTATGTTTCCTCTGGAAATGAAGTCAAGTGTTTGGATGTGCTCATGGCTAATGAATGGAAGCCACTTAAAGCTTACAACTACAACAAGGAT GAGATAAATCAGATTGCTTGCAACTCGAGAGCAGCTTTCCTTGCTTCTACAGATGATGGTGGTGACGTTAAGATTATCGACATTCACCAGCAGTGTTTGT ATAAAACTCTCAAGGCTGGCCACTCAAGTATCTGCAGTAGTGTTCAATTTATCCCTTGGAGACCTTGGGAAGTCATCACTGGAGGTCTCGACTCAAAGCT CATCATGTGGGACTTTTCAAAAGGGCGGCCAATCAAAATTGTCGATTTCGGTATGCCTGATGCTGCAACGAGCAGTAGTAACACATCACAGTGTCTCAAT CCTGCTTTTGTCCACTCAATAGTAGTTCCAGACACCGACATGCTCGAAAACTCAGGCAATATATGTGCAGTAGCTAGGGGTGATGGGGTTGTTGATGTTA TAGATATCGAATCAGAACTTGCTGCTATCAGGTCGAAAAATTATTCAAAGGCAAAGAAAGGATCTCAAGCCAAATCTAAAGTTGCTAGTGCAGAAACGCC AGAAACAACTCAAACCAGCAGCAGATTGCATCTGGATTACTCGTTGGGTGGCCATACTGCTGCGGTATCTTGTGTTGCATTCTCATTGTTTGGGGATAAG GGCAAGTTCATAGTTTCGGGAGGAAATGATAAATCAGTAAAGCTGTGGGATTGTTCTCGGCGCGATCAGGATAGCAGCAATCCGAATGGCCCTCTACATT GCAGCATCAGTTTGAACAAAAAGGTGAACTGGATCTGTACCGCTCCCACCGAATCAGAGAACCTGGTCATATGCGACACAACCAAAGTCGTCAAGGTCTA CTCAGTTTCATGA
AA sequence Show only first row Show all	>Lus10029246 pacid=23139820 polypeptide=Lus10029246 locus=Lus10029246.g ID=Lus10029246.BGIv1.0 annot-version=v1.0 MTEPRKLRGHKATATCCIASRDRPGIVVTSGEDGRVCWFDMRCKEVQFVMEVGKEPISSLCFKPGSEDILYVSSGNEVKCLDVLMANEWKPLKAYNYNKD EINQIACNSRAAFLASTDDGGDVKIIDIHQQCLYKTLKAGHSSICSSVQFIPWRPWEVITGGLDSKLIMWDFSKGRPIKIVDFGMPDAATSSSNTSQCLN PAFVHSIVVPDTDMLENSGNICAVARGDGVVDVIDIESELAAIRSKNYSKAKKGSQAKSKVASAETPETTQTSSRLHLDYSLGGHTAAVSCVAFSLFGDK GKFIVSGGNDKSVKLWDCSRRDQDSSNPNGPLHCSISLNKKVNWICTAPTESENLVICDTTKVVKVYSVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45760			Transducin/WD40 repeat-like su...		Lus10029246 [exp]	0	1
AT1G69060			Chaperone DnaJ-domain superfam...		Lus10019189 [exp]	2.6	0.9312
AT5G17240		SDG40	SET domain group 40 (.1)		Lus10035757 [exp]	3.7	0.9150
AT5G06560			Protein of unknown function, D...		Lus10016203 [exp]	5.3	0.9252
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Lus10000894 [exp]	5.7	0.9136
AT2G44270		ROL5	repressor of lrx1 (.1.2)		Lus10009739 [exp]	8.5	0.9220
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10008197 [exp]	8.8	0.9246
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Lus10004552 [exp]	14.0	0.9003
AT3G56120			S-adenosyl-L-methionine-depend...		Lus10033083 [exp]	14.5	0.8982
AT4G02120			CTP synthase family protein (....		Lus10025042 [exp]	14.7	0.9169
AT5G53220			unknown protein		Lus10001067 [exp]	22.7	0.9082

Compare expression of checked genes

Lus10029246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.