Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007298 [exp] 212 / 3e-71 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G059700 [exp] 51 / 2e-08 ND / Potri.011G069800 [exp] 50 / 5e-08 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029247 pacid=23139894 polypeptide=Lus10029247 locus=Lus10029247.g ID=Lus10029247.BGIv1.0 annot-version=v1.0 ATGGCAGAGTTTCATCACCTAATCGAGAGCCTTGACTGTCTCTGGTTCTTCTCCACCGTCTTCGACGACTACCCATCTTCTTCAATCATCCCTACCGCCG CCGAGAAACCAGCTCATCATCAATTGGAAGAACCGGAGAAAAAACAGAGCAACGACTCTGTTTTTCCGGTAGAGGAAACTGTCAAGCCGCCGCCGCCGCC GGCGGAGGAAGAGGTTAGAGTGGATTTAGTGGTGTTCGTGTCGAAGCCCGAAACGGCGTCGGAGAGGAGGAAGCGGCTGGCGAGGAGGTGGAGGAGCAAG AATAATAAGACGATAATATTGCTGGAGCTTGACCTCTGTTTTGACAACTTTTATTATTACAGTGGGTTGTACGGGTTGCCGGTGATGAGTCAGCAAACGG CGAGGAGGAAGAAGATGCCGCCGTTAAACGATTCGTTGGAGATGAAACGGAAGATCAAGTCCTGGGCTCATGCCGTAGCCTGCACTGTTAAGTGA
AA sequence Show only first row Show all	>Lus10029247 pacid=23139894 polypeptide=Lus10029247 locus=Lus10029247.g ID=Lus10029247.BGIv1.0 annot-version=v1.0 MAEFHHLIESLDCLWFFSTVFDDYPSSSIIPTAAEKPAHHQLEEPEKKQSNDSVFPVEETVKPPPPPAEEEVRVDLVVFVSKPETASERRKRLARRWRSK NNKTIILLELDLCFDNFYYYSGLYGLPVMSQQTARRKKMPPLNDSLEMKRKIKSWAHAVACTVK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10029247 [exp]	0	1
AT1G52870			Peroxisomal membrane 22 kDa (M...		Lus10043097 [exp]	5.7	0.8069
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Lus10018779 [exp]	13.0	0.8467
AT3G14460			LRR and NB-ARC domains-contain...		Lus10039548 [exp]	16.9	0.8292
AT5G50720		ATHVA22E	ARABIDOPSIS THALIANA HVA22 HOM...		Lus10032557 [exp]	17.1	0.8138
AT2G02980		OTP85	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10021667 [exp]	29.0	0.8153
AT5G66450			Phosphatidic acid phosphatase ...		Lus10028328 [exp]	32.4	0.8188
AT5G06240		EMB2735	embryo defective 2735 (.1)		Lus10017003 [exp]	37.9	0.7990
AT5G64010			unknown protein		Lus10035852 [exp]	44.9	0.7978
AT5G63380			AMP-dependent synthetase and l...		Lus10036994 [exp]	51.8	0.7845
AT5G53120		SPMS, SPDS3, AT...	spermidine synthase 3 (.1.2.3....		Lus10019016 [exp]	60.7	0.7789

Compare expression of checked genes

Lus10029247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.