Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42760 59 / 3e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007299 [exp] 170 / 9e-53 AT2G42760 115 / 7e-31 unknown protein Lus10015228 [exp] 93 / 8e-23 AT2G42760 115 / 5e-31 unknown protein Lus10005429 [exp] 70 / 2e-14 AT2G42760 111 / 1e-29 unknown protein Lus10015227 [exp] 42 / 0.0001 AT2G42760 93 / 1e-22 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G059900 [exp] 77 / 5e-17 AT2G42760 99 / 6e-25 unknown protein Potri.011G069900 [exp] 71 / 1e-14 AT2G42760 89 / 4e-21 unknown protein Potri.006G129800 [exp] 42 / 0.0001 AT2G42760 65 / 4e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029248 pacid=23139846 polypeptide=Lus10029248 locus=Lus10029248.g ID=Lus10029248.BGIv1.0 annot-version=v1.0 ATGGACGCAAGTGATTTCACTGACCTCTACGATTCAACCTGGTTCTTCGGGAAGATGCAGAAGAAGACTCTCAACACCCGCCGCCGTTCACTCTCCACGT CTGACTCGCCGCCCGATTCGCCGAGTCTGGCAGGGATGTACCTACAGCTCCAGAAGCAGCAGCAAAAGTCTCCGATGCTCCGATCAGTGAGCGAGGACTA CTTGCTGTTTTCGAAGCCGAGCTTCAATTCCGACTCCGGCGAAGCGTCACCGGATTCCGTCCTCTGCACGATCATCTCCGGGAAAGAGTTCACCGAATCG GCAGAGGATTTGACCACAATCACAGGATTCAGCCTCAATCGCCTCTTCCCCCCCGCTCCCGCCGAAGTCGAAATCGAAGGCGGCGGCGGCGAGGAGGAGG AGGGCAAAGAAGGAGAGCGGAGGGCCGGCGAGCAAGAGCCTGTCGTCTTTGGAATTCGAAGAATTGAAAGGAGGTTGGGGAAAAACGAAGTGGAGGAGGA GGAGGAGGAGGTGGCGGTGGCGAGGCCGTATCTGTCGGAGGCATGGGCGGTGCAGGAAGAGGAGAAGAGGAAGAAGAAGATTGCGATGATGAATTGGAGA GTTCCGGCGAAGGGGAATGAGATTGATATTAAGGATAGTTTGAGATTGTGGGCGCAGACTGTTGCATCAACTGTTAGATAA
AA sequence Show only first row Show all	>Lus10029248 pacid=23139846 polypeptide=Lus10029248 locus=Lus10029248.g ID=Lus10029248.BGIv1.0 annot-version=v1.0 MDASDFTDLYDSTWFFGKMQKKTLNTRRRSLSTSDSPPDSPSLAGMYLQLQKQQQKSPMLRSVSEDYLLFSKPSFNSDSGEASPDSVLCTIISGKEFTES AEDLTTITGFSLNRLFPPAPAEVEIEGGGGEEEEGKEGERRAGEQEPVVFGIRRIERRLGKNEVEEEEEEVAVARPYLSEAWAVQEEEKRKKKIAMMNWR VPAKGNEIDIKDSLRLWAQTVASTVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42760			unknown protein		Lus10029248 [exp]	0	1
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10012668 [exp]	2.4	0.9467
AT3G05170			Phosphoglycerate mutase family...		Lus10015164 [exp]	3.0	0.9420
AT3G03280			unknown protein		Lus10007960 [exp]	3.7	0.9458
					Lus10025243 [exp]	8.9	0.9203
AT4G34180			Cyclase family protein (.1)		Lus10031453 [exp]	9.4	0.9397
					Lus10039474 [exp]	9.5	0.9184
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10039541 [exp]	11.6	0.9384
AT4G34180			Cyclase family protein (.1)		Lus10001509 [exp]	12.7	0.9375
AT1G30135	ZIM	TIFY5A, JAZ8	jasmonate-zim-domain protein 8...		Lus10023303 [exp]	13.7	0.9144
AT5G02530			RNA-binding (RRM/RBD/RNP motif...		Lus10005895 [exp]	13.7	0.9074

Compare expression of checked genes

Lus10029248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.