Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031358 [exp] 142 / 2e-42 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029249 pacid=23139927 polypeptide=Lus10029249 locus=Lus10029249.g ID=Lus10029249.BGIv1.0 annot-version=v1.0 ATGGCTCTTCCGCCGATCTTAGCAACCGGCAGCCATATGGATCTCCTTGTCAAGTCTGAGAAGGAAGTGTTCAACATTGTCGAGTCCGCCGTCGCACTTG CCGACTGGCGCTGGCCTAAGGAGCTACACCGACTTCTCAAACAGTTTTACACCAAGCTAGTGGATTCCAATGCGGATGACGGCCACATCACTTCAGCCGC TGCTTCCAATCGAGAGACAGAGGTCGAGGATCCAACCAAGCGCAGAAAGATCATTAGTATCCAATTACGGCCGAGGGATCAACATTCTTCTAGTTTCCCC AAGCCGGTCGGAAAGTCCGTGACTGCAACGGCCGCGCCGTTTTTTCTGCCGCCAAAACCAGCGGAAGAGAAGGAGGAGAATCCAAGGAGGCATAGAACGG TCACCGGCGTTCAAACAGCCGTGACGGCAATGGCGCTGAAACGGAAGTTTGAAGAAGAGGAGTACGAGAAGAAATTGGAGAACTGCAAGAGGAAGTTGAG AGAGGCCTATAACCAGTACACTGATTCAAGGAAGAGATCTAAGGTCATCGCTTACATTCCTCCTCAATCGAATCATGATCAACTTCCCGATCAGAAGAAG TCCAAGCTGTTGACTAGTCGGAGACGATGGACAAACAAGGAAACAGCAACAGTTAAAAAAACTACTGGATATTGA
AA sequence Show only first row Show all	>Lus10029249 pacid=23139927 polypeptide=Lus10029249 locus=Lus10029249.g ID=Lus10029249.BGIv1.0 annot-version=v1.0 MALPPILATGSHMDLLVKSEKEVFNIVESAVALADWRWPKELHRLLKQFYTKLVDSNADDGHITSAAASNRETEVEDPTKRRKIISIQLRPRDQHSSSFP KPVGKSVTATAAPFFLPPKPAEEKEENPRRHRTVTGVQTAVTAMALKRKFEEEEYEKKLENCKRKLREAYNQYTDSRKRSKVIAYIPPQSNHDQLPDQKK SKLLTSRRRWTNKETATVKKTTGY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10029249 [exp]	0	1
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10017904 [exp]	1.0	0.8355
					Lus10027235 [exp]	16.6	0.7962
AT3G19550			unknown protein		Lus10002115 [exp]	18.1	0.8230
					Lus10009393 [exp]	20.0	0.8195
					Lus10001872 [exp]	24.1	0.8184
AT3G19550			unknown protein		Lus10002114 [exp]	28.8	0.8181
AT1G50380			Prolyl oligopeptidase family p...		Lus10032964 [exp]	30.4	0.8165
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10040310 [exp]	31.2	0.8154
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10002715 [exp]	33.7	0.6684
AT1G31670			Copper amine oxidase family pr...		Lus10010539 [exp]	34.2	0.8137

Compare expression of checked genes

Lus10029249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.