Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29280 164 / 4e-50 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT3G58710 153 / 1e-45 WRKY ATWRKY69, WRKY69 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2) AT2G34830 136 / 1e-37 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) AT1G30650 133 / 2e-36 WRKY ATWRKY14, AR411, WRKY14 WRKY DNA-binding protein 14 (.1) AT4G01250 114 / 4e-30 WRKY ATWRKY22, WRKY22 WRKY family transcription factor (.1) AT5G45050 110 / 3e-27 WRKY ATWRKY16, TTR1 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G52830 107 / 3e-27 WRKY ATWRKY27, WRKY27 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) AT4G23550 105 / 5e-27 WRKY ATWRKY29, WRKY29 WRKY family transcription factor (.1) AT4G24240 105 / 2e-26 WRKY ATWRKY7, WRKY7 WRKY DNA-binding protein 7 (.1) AT2G30590 105 / 2e-26 WRKY WRKY21 WRKY DNA-binding protein 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007305 [exp] 278 / 1e-95 AT1G29280 164 / 9e-51 WRKY DNA-binding protein 65 (.1) Lus10015229 [exp] 159 / 1e-47 AT1G29280 197 / 1e-62 WRKY DNA-binding protein 65 (.1) Lus10005428 [exp] 154 / 6e-46 AT1G29280 194 / 1e-61 WRKY DNA-binding protein 65 (.1) Lus10038426 [exp] 134 / 6e-38 AT2G34830 252 / 1e-81 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) Lus10007907 [exp] 113 / 3e-29 AT4G01250 228 / 2e-72 WRKY family transcription factor (.1) Lus10036399 [exp] 110 / 3e-29 AT4G01250 207 / 2e-66 WRKY family transcription factor (.1) Lus10039295 [exp] 108 / 8e-28 AT5G52830 170 / 4e-50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Lus10027538 [exp] 109 / 1e-27 AT5G52830 171 / 1e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Lus10041600 [exp] 108 / 1e-27 AT2G23320 276 / 2e-91 WRKY DNA-binding protein 15 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G060900 [exp] 209 / 3e-67 AT1G29280 247 / 3e-82 WRKY DNA-binding protein 65 (.1) Potri.011G070100 [exp] 206 / 2e-66 AT1G29280 237 / 3e-78 WRKY DNA-binding protein 65 (.1) Potri.011G157100 [exp] 135 / 4e-37 AT1G30650 305 / 1e-99 WRKY DNA-binding protein 14 (.1) Potri.001G460600 [exp] 134 / 8e-37 AT1G30650 322 / 2e-106 WRKY DNA-binding protein 14 (.1) Potri.014G119800 [exp] 119 / 2e-32 AT3G58710 124 / 7e-34 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2) Potri.002G195300 [exp] 114 / 6e-31 AT2G34830 120 / 1e-31 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) Potri.014G090300 [exp] 114 / 6e-30 AT4G01250 250 / 1e-81 WRKY family transcription factor (.1) Potri.002G164400 [exp] 114 / 7e-30 AT4G01250 244 / 4e-79 WRKY family transcription factor (.1) Potri.017G149000 [exp] 113 / 5e-29 AT5G52830 192 / 2e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Potri.004G072000 [exp] 110 / 5e-28 AT5G52830 182 / 2e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10029252 pacid=23139885 polypeptide=Lus10029252 locus=Lus10029252.g ID=Lus10029252.BGIv1.0 annot-version=v1.0 ATGGAGGAAAAGTACCGACGGAGAAGTTTGTCTTCGCTCATGATCATCAGCAGCGATGAAATAGTAGTACAAGAGGAGAGTCCGAACGACCACTCCGCCG AAAGTGGCCCTCCTGACTCCCCTCCTTATCGCGACGCCAAGGTGGCATCCACCTCCACTTCTTCCCCCAAAAGAAGTGGGAAGAGAGGAGCACATAAGAG GGTGGTGTCGATCCCGATCAAGGACGTGGAAGGATTCCGGTTGAAAGGGGAGAATGCTCCGCCGCCGGCGGATTCCTGGGCCTGGAGAAAGTACGGTCAG AAGCCCATCAAGGGATCTCCTTACCCCAGAGGATACTACAGATGTAGCAGTTCAAAGGGATGCCCAGCTAGGAAACAAGTGGAGAGGAGCCGTGTGGACC CCACCATGCTAGTTATCACCTACTCCTCCGACCACAACCACCCTTGGCCGCCACCTTCAAGAATCCACCACCACCATTCCACACCAGCAAACAAACGCCG CCACTCCGCCGGATACTCCTCCTACACATCCCGACACCCCAGAACCCGAGCCCGAACCAGAACTCGAACCCGAACCAGCAAACGAAAGGTTCACCAACTT CGGGAACGACGAGCCGATCTTACCGGCGGAGGAATTTGCATGGTTCGGGGAGATGGAGACGACGTCGTCCTCGTCGTCGACCATCATGGACTGCCCGATG TTCGAGGGGAAGGGTACGGATGTGGGGATGTCTGA
AA sequence Show only first row Show all	>Lus10029252 pacid=23139885 polypeptide=Lus10029252 locus=Lus10029252.g ID=Lus10029252.BGIv1.0 annot-version=v1.0 MEEKYRRRSLSSLMIISSDEIVVQEESPNDHSAESGPPDSPPYRDAKVASTSTSSPKRSGKRGAHKRVVSIPIKDVEGFRLKGENAPPPADSWAWRKYGQ KPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTMLVITYSSDHNHPWPPPSRIHHHHSTPANKRRHSAGYSSYTSRHPRTRARTRTRTRTSKRKVHQL RERRADLTGGGICMVRGDGDDVVLVVDHHGLPDVRGEGYGCGDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10029252 [exp]	0	1
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10007038 [exp]	1.0	0.9879
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10012239 [exp]	1.4	0.9708
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10029918 [exp]	2.4	0.9653
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10016388 [exp]	2.8	0.9562
AT3G49150			F-box/RNI-like superfamily pro...		Lus10025561 [exp]	3.2	0.9589
					Lus10015758 [exp]	3.5	0.9582
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Lus10010427 [exp]	4.2	0.9531
AT5G40240			nodulin MtN21 /EamA-like trans...		Lus10039481 [exp]	4.7	0.9409
AT3G06240			F-box family protein (.1)		Lus10001105 [exp]	4.9	0.9592
AT2G24260	bHLH	LRL1, bHLH066	LJRHL1-like 1 (.1)		Lus10021846 [exp]	5.3	0.9451

Compare expression of checked genes

Lus10029252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.