Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45750 393 / 4e-141 AtRABA1c RAB GTPase homolog A1C (.1) AT4G18800 393 / 4e-141 AthSGBP, AtRab11B, AtRABA1d RAB GTPase homolog A1D (.1) AT1G16920 373 / 2e-133 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1) AT5G60860 356 / 2e-126 AtRABA1f RAB GTPase homolog A1F (.1) AT3G15060 354 / 6e-126 AtRABA1g RAB GTPase homolog A1G (.1) AT1G06400 354 / 8e-126 ARA2, AtRABA1a, AtRab11E, Ara-2 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1) AT1G28550 351 / 2e-124 AtRABA1i RAB GTPase homolog A1I (.1) AT2G33870 347 / 4e-123 ArRABA1h RAB GTPase homolog A1H (.1) AT4G18430 340 / 2e-120 AtRABA1e RAB GTPase homolog A1E (.1) AT1G07410 307 / 3e-107 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007306 [exp] 441 / 6e-160 AT5G45750 387 / 5e-139 RAB GTPase homolog A1C (.1) Lus10002178 [exp] 362 / 1e-128 AT5G60860 423 / 4e-153 RAB GTPase homolog A1F (.1) Lus10017679 [exp] 361 / 2e-128 AT5G60860 426 / 4e-154 RAB GTPase homolog A1F (.1) Lus10015297 [exp] 357 / 1e-126 AT5G60860 428 / 6e-155 RAB GTPase homolog A1F (.1) Lus10025432 [exp] 356 / 1e-126 AT5G60860 422 / 1e-152 RAB GTPase homolog A1F (.1) Lus10013961 [exp] 351 / 1e-124 AT5G60860 412 / 7e-149 RAB GTPase homolog A1F (.1) Lus10020746 [exp] 350 / 3e-124 AT1G06400 375 / 3e-134 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1) Lus10029789 [exp] 350 / 5e-124 AT1G06400 373 / 3e-133 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A1A, Ras-related small GTP-binding family protein (.1) Lus10039895 [exp] 332 / 6e-117 AT5G60860 397 / 5e-143 RAB GTPase homolog A1F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G061000 [exp] 410 / 7e-148 AT4G18800 392 / 9e-141 RAB GTPase homolog A1D (.1) Potri.011G070300 [exp] 407 / 1e-146 AT5G45750 392 / 1e-140 RAB GTPase homolog A1C (.1) Potri.001G374000 [exp] 361 / 1e-128 AT5G60860 417 / 1e-150 RAB GTPase homolog A1F (.1) Potri.019G092500 [exp] 360 / 5e-128 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.011G061300 [exp] 359 / 9e-128 AT5G60860 416 / 5e-150 RAB GTPase homolog A1F (.1) Potri.013G123600 [exp] 356 / 2e-126 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.006G000300 [exp] 311 / 1e-108 AT1G07410 400 / 4e-144 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.016G000400 [exp] 303 / 1e-105 AT1G07410 380 / 4e-136 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.003G004100 [exp] 299 / 7e-104 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.010G197200 [exp] 298 / 8e-104 AT1G07410 370 / 3e-132 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10029253 pacid=23139931 polypeptide=Lus10029253 locus=Lus10029253.g ID=Lus10029253.BGIv1.0 annot-version=v1.0 ATGGCTAGTTACAGAGCTGAAGATGACTACGACTACCTCTTCAAAGTGGTCCTTATAGGCGATTCAGGCGTCGGCAAGTCCAATCTCCTCTCCAGATTCA CCCGCAACGAGTTCAGCCTCGAATCCAAGTCCACCATTGGCGTCGAGTTCGCCACCCGTAGCTTGACTGTTGATTCCAAGGTCATCAAGGCCCAGATTTG GGACACCGCTGGCCAAGAAAGGTACCGAGCCATAACCAGTGCTTATTACCGAGGAGCAGTGGGGGCACTACTCGTCTACGATGTCACTCGTCACGCCACA TTCGAAAACACCGAGAGGTGGCTAAAGGAGCTGAGGGACCACACCGACCCCAACATAGTGGTGATGCTGGTCGGCAACAAGTCAGACCTTCGCCATCTCG TGGCAGTCTCCACCGAGGATGGAAAATCCTTTGCAGAGAGGGAGTCTCTCTACTTCATGGAAACCTCGGCCCTCGAAGCCATCAATGTGGAGAATGCGTT TGCTGAGGTGCTGACTCAGATACACAGCGTGGTTAGCAAGAAGGCCATGGAGGCTGGAGAAGATGGATCTGGTTCGAACGTGCCCTCCAAAGGGGAGAAG ATTGACGTGAGTAAAGATGTTTCTGCTGTGAAGAAAGCTGGCTGCTGTTCCAGTTAA
AA sequence Show only first row Show all	>Lus10029253 pacid=23139931 polypeptide=Lus10029253 locus=Lus10029253.g ID=Lus10029253.BGIv1.0 annot-version=v1.0 MASYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLTVDSKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHAT FENTERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVSTEDGKSFAERESLYFMETSALEAINVENAFAEVLTQIHSVVSKKAMEAGEDGSGSNVPSKGEK IDVSKDVSAVKKAGCCSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45750		AtRABA1c	RAB GTPase homolog A1C (.1)		Lus10029253 [exp]	0	1
AT1G06850	bZIP	ATBZIP52	basic leucine-zipper 52 (.1.2)		Lus10024204 [exp]	1.0	0.9127
AT5G45750		AtRABA1c	RAB GTPase homolog A1C (.1)		Lus10007306 [exp]	1.4	0.8957
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10037998 [exp]	1.7	0.8764
AT5G10160			Thioesterase superfamily prote...		Lus10020419 [exp]	3.5	0.8709
AT5G48660			B-cell receptor-associated pro...		Lus10022777 [exp]	3.7	0.8502
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10034675 [exp]	5.5	0.8570
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10024604 [exp]	9.2	0.8626
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10031409 [exp]	10.6	0.8227
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10005430 [exp]	13.6	0.8374
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Lus10011189 [exp]	14.4	0.8270

Compare expression of checked genes

Lus10029253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.