Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18810 57 / 5e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007307 [exp] 213 / 8e-70 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G070400 [exp] 107 / 4e-29 ND / Potri.004G061100 [exp] 102 / 4e-27 ND / Potri.001G393001 [exp] 78 / 5e-18 ND / Potri.011G108700 [exp] 64 / 7e-13 AT4G15140 42 / 9e-06 unknown protein Potri.001G389150 [exp] 62 / 2e-12 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029254 pacid=23139785 polypeptide=Lus10029254 locus=Lus10029254.g ID=Lus10029254.BGIv1.0 annot-version=v1.0 ATGGAAGAAATGACATGTTCCACTTCTTCCACTTCTTCACCTTCCTCTGCCTCTTCATCCAATTCATCCCCCACCACTAAGCTCCAGCTAGTGTCCAAGT CAGTCTCCGACAGGCTCCTCAACAAGTTCTTCGATGCCAGCGAGTTCGATTTCGAGTACGAGAAGAGCGGGCTGTGGTCTCCTCCAGTGAAGAGGACGGT GTTCATGAGCTCTACTGGGGACAGAATGTTTACAGAAGAGGAGATGCTTCAAAAGCTCAGGAGAGTCATGGATGGTAATCACCGATCCAGAAGACGACAC AAGAGTGTATACAGAAATCCAATGAAAATTATTAGTAAGGTAGGGTGGGTTGGTTCATTTGGTTTGAACCTAACAATCGAGTCTTTCAAAGTGTCATTTT TCGCAGTGGCTATGGCTTCCCCTGCCACTGCATCTCCCTCTTCTGTCTACGCTGAAAGGGTATTCCCCGATACTTCTTTGTCGTACCGTAGTCTTTTCTT TCATGTCGCCCTGTTATCCTATTCGCTCACTTCTCATCTTTTCCCATCACATTGTACGAGGTTGTCTCTTTCCAGCGTTGAATTCTCGAATCAACTAGTA CAAATGGACGAGTATAAGTGCATGGTTCAGTTCGAATCGGGGCACCAGTGCCCACCCCAAGTTGCTGCAGAGGAACTGAGTAGCATCCTTGGTCCAATCC CAACTAGTCATTATTGGAGCCCTTTGAGTCTTCCCCCACAAGGCCACAACCCACAAAAATCATACCATGTGGTCCGTCACGTGATGGTCCAGAGCTGCAG CACGTGCCAACCACATGCACGGTTTAACCTCCACTCAAACTCGATATGA
AA sequence Show only first row Show all	>Lus10029254 pacid=23139785 polypeptide=Lus10029254 locus=Lus10029254.g ID=Lus10029254.BGIv1.0 annot-version=v1.0 MEEMTCSTSSTSSPSSASSSNSSPTTKLQLVSKSVSDRLLNKFFDASEFDFEYEKSGLWSPPVKRTVFMSSTGDRMFTEEEMLQKLRRVMDGNHRSRRRH KSVYRNPMKIISKVGWVGSFGLNLTIESFKVSFFAVAMASPATASPSSVYAERVFPDTSLSYRSLFFHVALLSYSLTSHLFPSHCTRLSLSSVEFSNQLV QMDEYKCMVQFESGHQCPPQVAAEELSSILGPIPTSHYWSPLSLPPQGHNPQKSYHVVRHVMVQSCSTCQPHARFNLHSNSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10029254 [exp]	0	1
AT1G26260	bHLH	CIB5, bHLH076	cryptochrome-interacting basic...		Lus10023562 [exp]	1.4	0.9193
					Lus10007307 [exp]	1.7	0.8933
AT4G34530	bHLH	bHLH063, CIB1	cryptochrome-interacting basic...		Lus10040448 [exp]	2.0	0.9040
AT5G35670		IQD33	IQ-domain 33 (.1)		Lus10002265 [exp]	4.0	0.8731
AT5G49800			Polyketide cyclase/dehydrase a...		Lus10042398 [exp]	7.3	0.8498
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10005315 [exp]	8.1	0.8561
AT5G14510			ARM repeat superfamily protein...		Lus10022275 [exp]	8.8	0.8489
AT4G32000			Protein kinase superfamily pro...		Lus10001937 [exp]	10.5	0.7669
AT5G62360			Plant invertase/pectin methyle...		Lus10031717 [exp]	13.0	0.8422
AT5G35670		IQD33	IQ-domain 33 (.1)		Lus10000919 [exp]	16.3	0.7835

Compare expression of checked genes

Lus10029254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.