Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18810 827 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G16720 100 / 5e-22 HCF173 high chlorophyll fluorescence phenotype 173 (.1) AT1G72420 66 / 9e-12 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (.1) AT4G31530 65 / 3e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G17350 55 / 3e-08 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (.1.2) AT2G34460 49 / 3e-06 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G37660 46 / 5e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G72640 42 / 0.0006 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007308 [exp] 1073 / 0 AT4G18810 850 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10033322 [exp] 109 / 6e-25 AT1G16720 874 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Lus10034781 [exp] 107 / 3e-24 AT1G16720 870 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Lus10022420 [exp] 66 / 3e-11 AT4G31530 415 / 4e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10009715 [exp] 64 / 3e-11 AT4G31530 408 / 1e-144 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10029985 [exp] 56 / 1e-08 AT1G17350 336 / 1e-118 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (.1.2) Lus10040884 [exp] 56 / 4e-08 AT2G34460 401 / 7e-142 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004936 [exp] 56 / 5e-08 AT2G34460 399 / 4e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035323 [exp] 42 / 0.0004 AT1G17350 235 / 2e-79 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G061200 [exp] 879 / 0 AT4G18810 812 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.007G003500 [exp] 103 / 4e-23 AT1G16720 852 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Potri.014G000400 [exp] 100 / 4e-22 AT1G16720 863 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Potri.011G079600 [exp] 57 / 1e-08 AT2G34460 370 / 6e-130 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G253900 [exp] 56 / 3e-08 AT4G31530 399 / 1e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.010G076600 [exp] 52 / 3e-07 AT1G17350 318 / 4e-111 NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (.1.2) Potri.006G086800 [exp] 49 / 4e-06 AT2G37660 450 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G063800 [exp] 44 / 0.0002 AT1G72640 348 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family CL0202 [flax] [poplar] GBD PF08547 [flax] [poplar] CIA30 Complex I intermediate-associated protein 30 (CIA30)
Representative CDS sequence Show only first row Show all	>Lus10029255 pacid=23139915 polypeptide=Lus10029255 locus=Lus10029255.g ID=Lus10029255.BGIv1.0 annot-version=v1.0 ATGGAGTCTTGTTGCTGCTCATCGCTCTACGCCTCTCCACTCTCAAGCCATCAGGGGTTTAGATCAGCTATTGGAAGAACTTCGTCCCTTTACACACCGT TTCTCCAGCTCGACCATAGACTGAATTCAGTTCGCTTAGGCTCGGCTACTGTTCGGAGAGGGATTGTATTGGCGGAAGCTAAGAATCAGGGTTGGGAATT GGGAAGGTTCGTGAAGACGTTCTACTTCTTCAATTCCCCTCCTTCTCCGGCTAAGTTCATCCAATCTTTAATTGAGAGAGTGTCCAGTCCATCCCCTTCA GAGCCAGACAAGAGAATGGAGACCTCTGAGGTGGTTCTGGTGGTTGGAGCTACCGGTGGTGTTGGTAAAAGAGTTGTTGATATCTTAAAGAAGAAAGGAA TCCCAGTTCGAGCTTTGGTCAGAAATGAAGAGAAGGCAAAGAGATTGTTAGGACCTGACGTAGACCTGATTGTTGGAGACATTACTAAAGTGAGCACTTT GGATCCTGAGTTGTTCAAGGGAGTTAGGAAAGTTATTAATGCTGCCTCCGTAATTGTTGGTCCTAAGGAAGGTGATACTCCAGATAGGGCGAAGTACAGC CAAGGAATTAAGTTCTTCGAACCAGAGATTAAGGGTGATTCACCAGAAATGGTGGAGTACCTTGGGATGAAGAATTTGATTAGTGCTGTACAGGGTACAG TAGGCATCCGCTCTGGGAAACTATTGTTTGGATGTGAAGGTAGTGAATTCAAAGATCTCCCTTGGGGTGCTTTGGATGATGTTGTGATGGGAGGAGTAAG TGAAAGTACATTGCAGATTGACACTACTGGCGGCGAAGATGGCGGGCCTACTGTGGTTTTTAAAGGTATTGTGTCGACTGCAAACAATGGTGGCTTCACC AGTATCAGAACAAAGAATTTTCCCGTACCGGAGGATCTGTCAGCATACGATGGTTTTGAATTGCGCCTGAAGGGTGACGGTCGTCGTTATAAGCTGATTG TTCGTACTGACAGTAACTGGGACACCGTTGGTTATACAGTGGGCTTTGACACAGCAGAAGGTGAATGGCAATCTATAAGACTGCCATTTTCTTCTCTGAA GCCTATATTTCGGGCTCGAACTGTACAAGATGCGCCCCCATTTGATCCAAGCAATGTCATCTCATTTCAGCTCATGTTCAGCAAGTTCGAGTCTGATGGA AAACTGAACCCAACTTTTGCGGAGGGTCCATTTCAGCTCCCTCTATCAACTATAAAGACTTTCATCAAAGAGCCTATTACTCCCAGGTTTGTTCATGTCG GCTCTGCTGGAGTTACTAGACCGGAAAGACCCGGTCTTGATCTCACTAAACAACCTCCTGCTGTTCGCTTGAACAAGGAATTGGATTTTATCCTCACTTT CAAGTTGAAGGGAGAAGATGTGATACGTGAGAGTGGCGTGCCATATTCAATCGTAAGACCTTGTGCTTTAACAGAGGAGCCAGCCGGAGCAGATCTTATA TTCGAGCAAGGCGACAATATAACAGGTAAGATATCCAGGGAAGAGGTGGCGAGGATATGCATTGCTGCTTTGGAGAGCCCATATGCATGTGACAAAACAT TCGAGGTAAAAAGCGTGATCCCATTCAGTGAGCCATTCACGGTGGACCCTGAGAACCCTCCACCGGAAAAGGATTACGACGTGTATTTCAAAAGCTTGAA GGACGGCATCACTGGCAAGGAACAGTTAGATCGAAGCCCTGTCCCCGTGTAA
AA sequence Show only first row Show all	>Lus10029255 pacid=23139915 polypeptide=Lus10029255 locus=Lus10029255.g ID=Lus10029255.BGIv1.0 annot-version=v1.0 MESCCCSSLYASPLSSHQGFRSAIGRTSSLYTPFLQLDHRLNSVRLGSATVRRGIVLAEAKNQGWELGRFVKTFYFFNSPPSPAKFIQSLIERVSSPSPS EPDKRMETSEVVLVVGATGGVGKRVVDILKKKGIPVRALVRNEEKAKRLLGPDVDLIVGDITKVSTLDPELFKGVRKVINAASVIVGPKEGDTPDRAKYS QGIKFFEPEIKGDSPEMVEYLGMKNLISAVQGTVGIRSGKLLFGCEGSEFKDLPWGALDDVVMGGVSESTLQIDTTGGEDGGPTVVFKGIVSTANNGGFT SIRTKNFPVPEDLSAYDGFELRLKGDGRRYKLIVRTDSNWDTVGYTVGFDTAEGEWQSIRLPFSSLKPIFRARTVQDAPPFDPSNVISFQLMFSKFESDG KLNPTFAEGPFQLPLSTIKTFIKEPITPRFVHVGSAGVTRPERPGLDLTKQPPAVRLNKELDFILTFKLKGEDVIRESGVPYSIVRPCALTEEPAGADLI FEQGDNITGKISREEVARICIAALESPYACDKTFEVKSVIPFSEPFTVDPENPPPEKDYDVYFKSLKDGITGKEQLDRSPVPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18810			NAD(P)-binding Rossmann-fold s...		Lus10029255 [exp]	0	1
AT4G18810			NAD(P)-binding Rossmann-fold s...		Lus10007308 [exp]	1.0	0.9597
AT3G19490		ATNHD1	ARABIDOPSIS THALIANA NA/H ANTI...		Lus10014094 [exp]	2.0	0.9421
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10021721 [exp]	3.2	0.9264
AT5G04440			Protein of unknown function (D...		Lus10038659 [exp]	3.2	0.9149
AT5G35970			P-loop containing nucleoside t...		Lus10024527 [exp]	4.6	0.9203
AT4G32140			EamA-like transporter family (...		Lus10042422 [exp]	4.9	0.9124
AT4G25290			DNA photolyases;DNA photolyase...		Lus10031137 [exp]	5.8	0.9061
AT1G67840		CSK	chloroplast sensor kinase (.1....		Lus10011413 [exp]	6.9	0.9062
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10029680 [exp]	8.5	0.9280
AT1G11960			ERD (early-responsive to dehyd...		Lus10024477 [exp]	8.8	0.8683

Compare expression of checked genes

Lus10029255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.