Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06410 1305 / 0 ATTPSA, ATTPS7 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) AT4G17770 1149 / 0 ATTPS5 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) AT1G68020 1124 / 0 ATTPS6 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) AT1G23870 1101 / 0 ATTPS9 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) AT1G70290 1089 / 0 ATTPSC, ATTPS8 trehalose-6-phosphatase synthase S8 (.1) AT1G60140 1086 / 0 ATTPS10 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) AT2G18700 988 / 0 ATTPSB, ATTPS11 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) AT1G16980 430 / 7e-138 ATTPS2 TREHALOSE -6-PHOSPHATASE SYNTHASE S2, trehalose-phosphatase/synthase 2 (.1) AT1G78580 417 / 6e-132 ATTPS1 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) AT4G27550 408 / 8e-130 ATTPS4 ARABIDOPSIS THALIANA TREHALOSE PHOSPHATASE/SYNTHASE 4, trehalose-6-phosphatase synthase S4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007311 [exp] 1679 / 0 AT1G06410 1347 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10005425 [exp] 1528 / 0 AT1G06410 1338 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10015231 [exp] 1526 / 0 AT1G06410 1337 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10020741 [exp] 1242 / 0 AT1G06410 1278 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10029821 [exp] 1233 / 0 AT1G06410 1284 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10034585 [exp] 1156 / 0 AT1G68020 1462 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10021805 [exp] 1136 / 0 AT1G68020 1452 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10030853 [exp] 1104 / 0 AT1G60140 1388 / 0.0 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) Lus10030635 [exp] 1090 / 0 AT1G60140 1367 / 0.0 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G070900 [exp] 1477 / 0 AT1G06410 1343 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Potri.004G061500 [exp] 1451 / 0 AT1G06410 1286 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Potri.003G094500 [exp] 1192 / 0 AT4G17770 1442 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.001G139500 [exp] 1175 / 0 AT4G17770 1429 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.010G104500 [exp] 1154 / 0 AT1G68020 1415 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.008G136500 [exp] 1140 / 0 AT1G68020 1410 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.012G078500 [exp] 1132 / 0 AT1G23870 1284 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.015G074000 [exp] 1129 / 0 AT1G23870 1285 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.018G097700 [exp] 996 / 0 AT2G18700 1118 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) Potri.006G175500 [exp] 994 / 0 AT2G18700 1151 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF02358 [flax] [poplar] Trehalose_PPase Trehalose-phosphatase CL0113 [flax] [poplar] GT-B PF00982 [flax] [poplar] Glyco_transf_20 Glycosyltransferase family 20
Representative CDS sequence Show only first row Show all	>Lus10029258 pacid=23139771 polypeptide=Lus10029258 locus=Lus10029258.g ID=Lus10029258.BGIv1.0 annot-version=v1.0 ATGATGTCCAAATCGTACACCAATCTATTGGATCTAGCTTCCGGTAACTTTCCGATGATGAGTCAACCACGGGACAAGAAAAGGTTGACTCGTGTAACGA CTGTTCCTGGGATTATATCCGAGCTTGATGATGATCAGGCCAACAGTGTTGCTTCGGACGTGCAGTCTTCGTTAATCCAGGACCGGATTATAATTGTTGC GAATCAGCTCCCCGTGAAGGCCAAGCGCAGACCAGATAATAAAGGTTGGAGCTTTAGTTGGGATGAGGACTCCTTGCTCTTACAGTGTAAAGATGGTTTC AGTGAAGATATGGAAGTTATATACGTCGGTTCTTTGCGAGTCGAAGTCGATCCTAACGAGCAGGACGATGTTTCCCAGATTTTGTTGGATAAGTTCAAGT GTGTCCCTGCATTTTTGCCTCCTGATATTTTGGCTAAGTTCTATAACGGGTTTTGCAAGCAGCATTTGTGGCCTCTTTTCCATTACATGCTTCCCTTTTC AGCTAATCATGGAGGGAGATTCGATCGGTCCCTGTGGGAGGCGTACGTTGCAGCGAATAAGATCTTCTCCCAGAGAGTGATCGAGGTTATAAACCCCGAG GATGACTATGTCTGGATTCATGACTACCATTTAATGGTGCTTCCAACTTTCTTAAGGAGGAGGTTCACTAGATTGAGAATGGGGTTCTTCTTGCATAGTC CGTTCCCTTCGTCTGAGATATACCGGACTTTGCCAGTGAGGGAAGAGATTCTTAAAGCGCTTCTGAACTCTGATCTTATTGGATTCCATACCTTTGATTA TGCTCGGCATTTCTTGTCTTGCTGTAGTCGGATGGGGGGGTTGGAGTATCAGTCGAAACGAGGATATATTGGGTTGGAATACTATGGTAGGACGATTGGG ATCAAGATAATGCCGGTTGGGATACACATGGGACAGATCGAGACGGTTTTGAAGCAGCCGGATAATGAGTGGAGGGTGAAAGAGCTGAAACAGCAGCTCG AAGGGAAGACGGTTTTGCTTGGTGTTGATGATATGGACATCTTTAAAGGTCTTAACTTGAAGCTTCTGGCAATGGAAGCAATGCTGAAACAGCATCCGAA GTGGCAAGGGAGGGCGGTTCTGGTCCAGATTGCGAATCCCGCTAGGGGAAGCGGGAAAGACCTTGAAGATGTGCAGGCCGAGATTCAGGAAAGCTGCAAG AGGATTATCGAGTCGTTTGGCCGACCGGGGTATGAACCGGTTATCTTCATTGACCGACAGGTTTCGATTAGTGAAAGATCGGCATACTACAATGTTGCTG AGTGTGTGGTGGTCTCTGCTGTAAGGGACGGATTGAACCTTACTCCGTACGAGTATATCGTGTGCAGGCAGGGTTCGAGTTCAAGTTCGGAATCTAGTAG TGGTCCAAAGAAGAGCATGCTTGTCGTATCTGAATTCATCGGGTGTTCCCCTTCGCTCAGCGGTGCTATTCGGGTCAATCCATGGAACGTGGAAGCTACT GCCGAAGCAATGAACGAGGCGATCTCGATGTCCGATCACGAGAAGCAACTGCGACACGAGAAGCACTACCGATACGTGAGTACCCACGATGTCGCGTACT GGTCAAGGAGCTTTTTCCAGGATCTCGAAAGGGCTTGCAGGGATCATTTCATAAGGCGGTGTTGGGGTATCGGGTTGGGATTCGGTTTCAGGGTCGTTGC GCTCGATCCTAATTTCAGAAAGCTGTCCATTGATGAACTTGTGAATGCATATTTGAAGTCGAAAAAGAGAGCCATTCTGCTGGACTATGATGGAACTGTG ATGCCACAGACATCCATCAACAAGACACCGAGTCCCGAAATACTTTCGATCATCAATACCTTATGCGCTGATGCCAAGAACAAAGTGTTTGTTGTTAGTG GGAGAGGAAAGGACAGTTTAGGTACGTGGTTTTCTCCTTGCAAGAAACTCGGAATTGCTGCGGAACATGGCTATCACATGAGGTGGTCTGGTGATAAGGA GTGGGAAACTTGTGGGCAGAACTGCGATTTTGGGTGGTTTCAGATTGTTGAGCCTGTAATGAAGTTGTATACAGAAGCCACTGACGGTTCCTACATTGAG GCCAAAGAGAGTGCCTTGGTCTGGCACCATAGAGATGCAGACCCGGGATTCGGTGCTAGCCAGGCGAAAGAGATGTTAGACCATCTTGAAAGTGTGCTCG CTAACGAACCTGTTTCTGTGAAAAGCGGTCAATCCATCGTCGAAGTAAAGCCTCAGGGGGTTAGCAAAGGTTTGGTGGCAGAGAAGATATTCACATCGAT GTCCGAGGACGGGAAACAGGCTGACTTTGTCCTGTGCATTGGCGATGACAGGTCAGACGAAGACATGTTCGAGAGAATCGAGAATGCCTTGACGAGTGGA ATGCTTTCCACGAGCACAAACGTGTTTGCTTGCACAGTCGGCCAGAAACCAAGCAAAGCCAAGTACTACTTGGACGACACGACTGATGTGATCAACATGC TCAGAGCTCTCGCAGATGATTCGGACCCTTGTGCTTCCGACGACAGCGACTCATCATCATAA
AA sequence Show only first row Show all	>Lus10029258 pacid=23139771 polypeptide=Lus10029258 locus=Lus10029258.g ID=Lus10029258.BGIv1.0 annot-version=v1.0 MMSKSYTNLLDLASGNFPMMSQPRDKKRLTRVTTVPGIISELDDDQANSVASDVQSSLIQDRIIIVANQLPVKAKRRPDNKGWSFSWDEDSLLLQCKDGF SEDMEVIYVGSLRVEVDPNEQDDVSQILLDKFKCVPAFLPPDILAKFYNGFCKQHLWPLFHYMLPFSANHGGRFDRSLWEAYVAANKIFSQRVIEVINPE DDYVWIHDYHLMVLPTFLRRRFTRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNSDLIGFHTFDYARHFLSCCSRMGGLEYQSKRGYIGLEYYGRTIG IKIMPVGIHMGQIETVLKQPDNEWRVKELKQQLEGKTVLLGVDDMDIFKGLNLKLLAMEAMLKQHPKWQGRAVLVQIANPARGSGKDLEDVQAEIQESCK RIIESFGRPGYEPVIFIDRQVSISERSAYYNVAECVVVSAVRDGLNLTPYEYIVCRQGSSSSSESSSGPKKSMLVVSEFIGCSPSLSGAIRVNPWNVEAT AEAMNEAISMSDHEKQLRHEKHYRYVSTHDVAYWSRSFFQDLERACRDHFIRRCWGIGLGFGFRVVALDPNFRKLSIDELVNAYLKSKKRAILLDYDGTV MPQTSINKTPSPEILSIINTLCADAKNKVFVVSGRGKDSLGTWFSPCKKLGIAAEHGYHMRWSGDKEWETCGQNCDFGWFQIVEPVMKLYTEATDGSYIE AKESALVWHHRDADPGFGASQAKEMLDHLESVLANEPVSVKSGQSIVEVKPQGVSKGLVAEKIFTSMSEDGKQADFVLCIGDDRSDEDMFERIENALTSG MLSTSTNVFACTVGQKPSKAKYYLDDTTDVINMLRALADDSDPCASDDSDSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10029258 [exp]	0	1
AT5G11250			Disease resistance protein (TI...		Lus10007826 [exp]	2.8	0.8281
AT2G17020			F-box/RNI-like superfamily pro...		Lus10025094 [exp]	5.3	0.8426
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10019868 [exp]	7.9	0.8578
AT1G13940			Plant protein of unknown funct...		Lus10030419 [exp]	8.1	0.8458
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10043037 [exp]	9.6	0.8519
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10020551 [exp]	12.7	0.7538
AT5G42940			RING/U-box superfamily protein...		Lus10018725 [exp]	13.9	0.8331
AT1G15680			F-box family protein (.1)		Lus10007302 [exp]	14.7	0.8258
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10011134 [exp]	16.6	0.8394
AT1G58200		MSL3	MSCS-like 3 (.1.2)		Lus10012733 [exp]	19.0	0.8195

Compare expression of checked genes

Lus10029258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.