Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29300 414 / 1e-141 UNE1 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) AT1G53380 357 / 2e-119 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT3G14870 342 / 1e-113 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT2G45260 267 / 5e-85 Plant protein of unknown function (DUF641) (.1) AT3G60680 198 / 1e-57 Plant protein of unknown function (DUF641) (.1) AT4G34080 155 / 5e-44 Plant protein of unknown function (DUF641) (.1) AT5G58960 155 / 4e-42 GIL1 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT2G32130 144 / 3e-41 Plant protein of unknown function (DUF641) (.1) AT4G33320 145 / 9e-40 Plant protein of unknown function (DUF641) (.1) AT4G36100 91 / 8e-21 Sec1/munc18-like (SM) proteins superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007312 [exp] 848 / 0 AT1G29300 433 / 2e-149 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10005424 [exp] 540 / 0 AT1G29300 365 / 3e-123 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10015232 [exp] 515 / 0 AT1G29300 377 / 7e-128 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Lus10001989 [exp] 265 / 6e-84 AT2G45260 671 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10030291 [exp] 263 / 2e-83 AT2G45260 668 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10009284 [exp] 201 / 1e-58 AT3G60680 541 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10008587 [exp] 169 / 4e-47 AT2G45260 266 / 1e-84 Plant protein of unknown function (DUF641) (.1) Lus10024190 [exp] 164 / 2e-45 AT2G45260 270 / 1e-86 Plant protein of unknown function (DUF641) (.1) Lus10009923 [exp] 163 / 4e-45 AT2G45260 275 / 2e-88 Plant protein of unknown function (DUF641) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G071000 [exp] 551 / 0 AT1G29300 483 / 3e-169 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Potri.004G061600 [exp] 531 / 0 AT1G29300 485 / 6e-170 unfertilized embryo sac 1, Plant protein of unknown function (DUF641) (.1) Potri.001G387700 [exp] 379 / 5e-128 AT1G53380 524 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.011G108000 [exp] 368 / 1e-123 AT1G53380 531 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.002G145900 [exp] 271 / 9e-87 AT2G45260 692 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.002G145000 [exp] 205 / 2e-60 AT3G60680 494 / 4e-172 Plant protein of unknown function (DUF641) (.1) Potri.014G066600 [exp] 187 / 1e-53 AT3G60680 522 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.014G067600 [exp] 166 / 2e-47 AT2G45260 462 / 3e-163 Plant protein of unknown function (DUF641) (.1) Potri.009G041000 [exp] 171 / 5e-47 AT5G58960 466 / 2e-159 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.013G155400 [exp] 168 / 7e-47 AT2G45260 300 / 4e-98 Plant protein of unknown function (DUF641) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04859 [flax] [poplar] DUF641 Plant protein of unknown function (DUF641)
Representative CDS sequence Show only first row Show all	>Lus10029259 pacid=23139841 polypeptide=Lus10029259 locus=Lus10029259.g ID=Lus10029259.BGIv1.0 annot-version=v1.0 ATGGAGACGGCCAAATGCCGATCGATCCACACCGGCGGCAACAAGAGCAGCAGCAAGATCGCCAGAACATTCCATAAGGTCATCAATCTCAAAACCACCA CCACCAAAGTCTCCTCCAACAACGGCATCTGGCCGAACAAGCTCTCCGACGACCACCTCCACCACCCTAACAAGGATGCCAAAACCGCCGCCAAACGCGG CGCCGTCCTGGAAGCTCTCCTCGCGAAGATGTTTGCGGAAGTGACTGCGATCAAAGCCGCGTACGCCGAGCTCCAGATGGCGCAGAATCCTTACTCCACC GAGGCGATCCAGGCCGCCGATCAGCTCGTCGTCGACGAGCTCAAGACTCTCTCCGATTTGAAGAGGAGCTTCGTAAAAAACGAGCTCGATTTCATCTCGC CGCAGGTGACTGGGATGCTTGCCGAGATCCAGGAGCAGCAGAGCTTGATGAAGACTTACGAGATCACGATCAAGAAGCTGGAAGCTGAAGCTGATTTGAA ATCCTCCGAAGCTGAATCGATGAAGAAGCTTCTGGATGAGTACACGGCGTTCAATCGGAATCTCGAAAAGAAGCTTAACGCCAGCGGTCCGTTGCCGATG TTCGACAATATTCAACTCTCCGTACTGAATCCGTCGCATTTAGTCAGCTGCCTACACTACGCATTGCGATCCATGAGGAGCTTCTCGAAATTGATGATCC GCGAGATGGAATCGGCTCACTGGGAGCTCGACGCCGCTGCGGCGGCGATCGAGCCGAAATTAGGGTTTCCGATTTCGAAGCAGAACCGCTCCTTCGTATT CGAATCGTTCATTTCCAAGACGATGTACGAAGGGTTCAATCACCTCAATTTCATCGTAGTCGCGAATGAATCTCTGACGGAGAATAACCACGACGACAAC AATCACCGCCGCAGGGAGAATTGCTTCGGCAAGTTTAAAAAGATGAAGGCGGTGAATCTCCGGCATTACCTAACTCAGAATCCGAACTCGTCGTTTGCTA AGTTTACTCGAGGGAAGTATTCGCAGCTCGTCCACGCCAAGATGGAAGTTTCGCTGTTTGGAAATTTGAACCAGAGGAAAGCGGTGATGTCAGGCGCGTT CCCCGACACGGCATTTTTCGGCGCGTTTGCGGAGATGGCGCGGCGCGTGTGGGTGTTGAATTTGTTGGCGTTGTCGTTCGGCGAGCAGCTTCACATTTTC CAGGTGAGGAAGAACTGCCGGTTCTCGGAAGTGTATATGGAGAGCGTGAGCGAGGAGGCGCCGGGCGGTGGTGGCGCCGATGTGAGGGTGGGATTCACGG TGGTTCCAGGGTTTAAGATTGGGCAGACGGTGGTACAGAGTCAGGTTTATTTGACGCCGGCGTGTAAATCACCGGCCAGGCGTTGA
AA sequence Show only first row Show all	>Lus10029259 pacid=23139841 polypeptide=Lus10029259 locus=Lus10029259.g ID=Lus10029259.BGIv1.0 annot-version=v1.0 METAKCRSIHTGGNKSSSKIARTFHKVINLKTTTTKVSSNNGIWPNKLSDDHLHHPNKDAKTAAKRGAVLEALLAKMFAEVTAIKAAYAELQMAQNPYST EAIQAADQLVVDELKTLSDLKRSFVKNELDFISPQVTGMLAEIQEQQSLMKTYEITIKKLEAEADLKSSEAESMKKLLDEYTAFNRNLEKKLNASGPLPM FDNIQLSVLNPSHLVSCLHYALRSMRSFSKLMIREMESAHWELDAAAAAIEPKLGFPISKQNRSFVFESFISKTMYEGFNHLNFIVVANESLTENNHDDN NHRRRENCFGKFKKMKAVNLRHYLTQNPNSSFAKFTRGKYSQLVHAKMEVSLFGNLNQRKAVMSGAFPDTAFFGAFAEMARRVWVLNLLALSFGEQLHIF QVRKNCRFSEVYMESVSEEAPGGGGADVRVGFTVVPGFKIGQTVVQSQVYLTPACKSPARR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Lus10029259 [exp]	0	1
AT4G14740			Plant protein of unknown funct...		Lus10041187 [exp]	4.6	0.9216
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10025766 [exp]	13.1	0.8916
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10002181 [exp]	15.7	0.8949
AT3G25290			Auxin-responsive family protei...		Lus10025877 [exp]	16.3	0.9161
AT5G06610			Protein of unknown function (D...		Lus10015972 [exp]	16.7	0.8983
AT3G25130			unknown protein		Lus10025905 [exp]	16.9	0.8775
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10010235 [exp]	20.5	0.9013
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10035897 [exp]	20.8	0.9061
AT1G01225			NC domain-containing protein-r...		Lus10005981 [exp]	21.4	0.9006
AT3G25290			Auxin-responsive family protei...		Lus10025878 [exp]	22.2	0.9108

Compare expression of checked genes

Lus10029259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.