Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47750 303 / 2e-104 PEX11A peroxin 11A (.1) AT3G47430 86 / 1e-19 PEX11B peroxin 11B (.1) AT2G45740 45 / 2e-05 PEX11D peroxin 11D (.1.2.3) AT1G01820 44 / 4e-05 PEX11C peroxin 11c (.1) AT3G61070 43 / 0.0001 PEX11E peroxin 11E (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003945 [exp] 468 / 6e-169 AT1G47750 322 / 8e-112 peroxin 11A (.1) Lus10038925 [exp] 89 / 9e-21 AT3G47430 321 / 3e-112 peroxin 11B (.1) Lus10027213 [exp] 47 / 1e-06 AT3G47430 200 / 8e-66 peroxin 11B (.1) Lus10041368 [exp] 48 / 3e-06 AT1G01820 416 / 1e-149 peroxin 11c (.1) Lus10036560 [exp] 47 / 8e-06 AT1G01820 416 / 2e-149 peroxin 11c (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G134000 [exp] 336 / 4e-117 AT1G47750 332 / 8e-116 peroxin 11A (.1) Potri.014G042000 [exp] 331 / 5e-115 AT1G47750 327 / 8e-114 peroxin 11A (.1) Potri.001G124400 [exp] 97 / 5e-24 AT3G47430 329 / 1e-115 peroxin 11B (.1) Potri.003G108900 [exp] 91 / 1e-21 AT3G47430 324 / 1e-113 peroxin 11B (.1) Potri.002G153800 [exp] 44 / 6e-05 AT2G45740 400 / 1e-143 peroxin 11D (.1.2.3) Potri.014G076400 [exp] 43 / 8e-05 AT2G45740 392 / 4e-140 peroxin 11D (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05648 [flax] [poplar] PEX11 Peroxisomal biogenesis factor 11 (PEX11)
Representative CDS sequence Show only first row Show all	>Lus10029260 pacid=23139933 polypeptide=Lus10029260 locus=Lus10029260.g ID=Lus10029260.BGIv1.0 annot-version=v1.0 ATGGATTCATCATCCACCCCAACCACCAACCTTCTCCCGGCGTTGGAAAACGAATCCGCCGACGCTCCATCAAACTCCGCTAAGCCCGTCGCTCTGCCAA GCTCGAAGAAGAGCACCGATGATCGAGATTTCCTGAACCACTTGGAAGCGTACCTATCCAAGCGCGACGGCGTGGACAAGCTCCTCAAGATCTCCCGTTA CGCAACGAAGATCATCTTATCATCCTCCGTCCTCCCCGAAACCCTAATCTTGACTGGCCGCCTCAAGAGCTTTGAGTCTAGTGTCGGCCTCAGTCGGAAA GCCTTCCGCCTAGGGAAATTCGTGCAGGACGTCAATTCCTTCAGCTCCTCCCATTCCCATTCCACGAGAGAATCGATCCTCAATCTCATCGCCTACGGCG GCGAAGGCGTCTACTACTTCATCGAGCAATTCGTCTGGTTGTCGAAATCGGGGCTAATCGACGGGAGGCACGCCAAGGGTTTGGGGAAGATGAGCGCCTG GGCCGAATTCGTCGGTTATATTGGGAGCATTTCGTTGAAATTTAGGGATTTGAAGGGATTGGAAGGGGAGGAAGCGGCTTTGAGATCCACAATCGAAATA GCGGAATCAAGAGAGGTTGGGTGCGGAGAGGAAGGGGAGAGGATGAGAAAACTAAAGGAGAAGAAGCTGATGAAGAGACTGTCGATTGTTCAGGATTTGG CCGATGGGTTTATGGCTTTGGCGGATATCCGGGATGGGAAAGGGAAGCTATCGTCGCCGTTGTTCCTGTCTTGTGCTGGTCTTTTGTCTGCTATCATTAG TACCCAGAAGAACTGGGTATCCTGCTGA
AA sequence Show only first row Show all	>Lus10029260 pacid=23139933 polypeptide=Lus10029260 locus=Lus10029260.g ID=Lus10029260.BGIv1.0 annot-version=v1.0 MDSSSTPTTNLLPALENESADAPSNSAKPVALPSSKKSTDDRDFLNHLEAYLSKRDGVDKLLKISRYATKIILSSSVLPETLILTGRLKSFESSVGLSRK AFRLGKFVQDVNSFSSSHSHSTRESILNLIAYGGEGVYYFIEQFVWLSKSGLIDGRHAKGLGKMSAWAEFVGYIGSISLKFRDLKGLEGEEAALRSTIEI AESREVGCGEEGERMRKLKEKKLMKRLSIVQDLADGFMALADIRDGKGKLSSPLFLSCAGLLSAIISTQKNWVSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47750		PEX11A	peroxin 11A (.1)		Lus10029260 [exp]	0	1
AT5G17350			unknown protein		Lus10034636 [exp]	1.7	0.9163
AT3G07870			F-box and associated interacti...		Lus10038606 [exp]	2.2	0.9253
					Lus10023370 [exp]	2.4	0.9169
					Lus10019272 [exp]	2.6	0.8998
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10034363 [exp]	3.2	0.9011
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Lus10020077 [exp]	3.5	0.9007
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Lus10033798 [exp]	4.0	0.8965
AT2G25250			unknown protein		Lus10041025 [exp]	4.0	0.9091
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Lus10004413 [exp]	7.3	0.8760
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10024087 [exp]	9.8	0.8685

Compare expression of checked genes

Lus10029260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.