Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34250 909 / 0 SecY protein transport family protein (.1.2) AT1G29310 908 / 0 SecY protein transport family protein (.1) AT1G78720 896 / 0 SecY protein transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007313 [exp] 961 / 0 AT2G34250 909 / 0.0 SecY protein transport family protein (.1.2) Lus10010932 [exp] 955 / 0 AT2G34250 910 / 0.0 SecY protein transport family protein (.1.2) Lus10031399 [exp] 955 / 0 AT2G34250 910 / 0.0 SecY protein transport family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G107900 [exp] 947 / 0 AT2G34250 909 / 0.0 SecY protein transport family protein (.1.2) Potri.001G387600 [exp] 946 / 0 AT2G34250 908 / 0.0 SecY protein transport family protein (.1.2) Potri.011G114900 [exp] 669 / 0 AT1G78720 672 / 0.0 SecY protein transport family protein (.1) Potri.011G114200 [exp] 475 / 2e-167 AT1G78720 474 / 3e-167 SecY protein transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10559 [flax] [poplar] Plug_translocon Plug domain of Sec61p PF00344 [flax] [poplar] SecY SecY translocase
Representative CDS sequence Show only first row Show all	>Lus10029262 pacid=23139953 polypeptide=Lus10029262 locus=Lus10029262.g ID=Lus10029262.BGIv1.0 annot-version=v1.0 ATGGGAGGAGGATTTAGAGTTCTGCATCTGGTGCGACCGTTCCTATCGTTCTTACCGGAAGTCCAGAGCGCCGATCGGAAGATCCCGTTCAGGGAGAAGG TGATCTACACCGTTATTTCTCTATTTATCTTCCTCGTCTGCAGTCAGCTCCCGCTCTATGGAATCCACTCGACAACTGGCGCAGATCCTTTCTACTGGAT GCGTGTCATCCTCGCTTCCAACAGGGGGACCGTCATGGAGCTCGGAATCACCCCGATCGTCACATCTGGACTGGTGATGCAGCTCTTGGCTGGATCCAAA ATCATCGAGGTCGACAACAGCGTCCGCGAGGACCGTGCTTTGCTGAATGGGGCACAAAAGCTGTTGGGTATCCTGATTGCTGTAGGTGAAGCGGTTGCTT ATGTGTTATCTGGAATGTATGGAAGCGTTGGTCAGTTGGGCGTTGGTAACGCTATTCTGATCATCATCCAATTGTGCTTCGCTGGAATCATCGTCATCTG TTTGGATGAATTGCTCCAGAAAGGATATGGTCTCGGTTCTGGGATTTCTCTTTTCATCGCTACCAACATCTGTGAAAGCATCATCTGGAAGGCATTCAGC CCGACCACAATCAACAGCGGTCGTGGGGCCGAATTCGAGGGTGCAATTATTGCACTGTTCCACCTTCTAATCACGAGGACTGACAAAGTTCGTGCTTTAA GAGAGGCATTCTACCGGCAGAATCTTCCCAATGTTACCAACTTGCTTGCGACTGTGTTGATCTTCCTTATTGTCATCTACTTCCAAGGCTTCCGTGTAGT GTTGCCTGTGAGGTCGAAGAATGCTCGTGGGCAGCAGGGTTCATACCCGATTAAGCTTTTCTACACCTCCAACATGCCCATCATTCTTCAGTCCGCTCTT GTTTCTAACCTCTATTTCATCTCTCAGCTGTTGTACCGTAAGTACAGTGGAAACTTCCTTGTGAACATATTGGGAAAGTGGAAGGAGTCTGAATACTCTG GTGGCCAGTTCATCCCAGTTGGTGGTCTTGCATACTATGTGACTGCTCCCGCTAGCTTGGCAGACATGGCAGCCAACCCATTCCATGCATTGTTCTACCT GATATTTATGCTCGGAGCTTGCGCTCTCTTCTCCAAGACCTGGATTGAGGTCTCTGGATCTTCCGCCCGAGATGTTGCCAAGCAACTGAAGGAGCAACAA ATGGTGATGCCTGGACATCGCGATTCGAACCTGCAGAAGGAGCTGAACCGGTACATCCCGACAGCAGCTGCTTTCGGTGGCATCTGCATTGGTGCATTGA CGGTCCTGGCCGATTTCATGGGTGCAATTGGTTCAGGGACAGGAATCCTGCTAGCTGTAACCATCATATACCAGTACTTCGAGACCTTTGAGAAGGAGAA GGCCAGTGAACTCGGGTTCTTCGGCTTCTGA
AA sequence Show only first row Show all	>Lus10029262 pacid=23139953 polypeptide=Lus10029262 locus=Lus10029262.g ID=Lus10029262.BGIv1.0 annot-version=v1.0 MGGGFRVLHLVRPFLSFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSK IIEVDNSVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIIIQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFS PTTINSGRGAEFEGAIIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSAL VSNLYFISQLLYRKYSGNFLVNILGKWKESEYSGGQFIPVGGLAYYVTAPASLADMAANPFHALFYLIFMLGACALFSKTWIEVSGSSARDVAKQLKEQQ MVMPGHRDSNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKEKASELGFFGF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34250			SecY protein transport family ...		Lus10029262 [exp]	0	1
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Lus10030495 [exp]	1.7	0.8720
AT4G22990			Major Facilitator Superfamily ...		Lus10002956 [exp]	3.9	0.8316
AT2G34250			SecY protein transport family ...		Lus10007313 [exp]	4.5	0.8171
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10017102 [exp]	7.3	0.8276
AT1G64550		SCORD5, AtGCN20...	susceptible to coronatine-defi...		Lus10023043 [exp]	8.8	0.8265
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10028140 [exp]	10.2	0.8134
AT4G32390			Nucleotide-sugar transporter f...		Lus10002904 [exp]	12.8	0.8469
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10032649 [exp]	16.6	0.8400
AT5G05480			Peptide-N4-(N-acetyl-beta-gluc...		Lus10017437 [exp]	18.7	0.7954
AT5G57460			unknown protein		Lus10000167 [exp]	18.7	0.8455

Compare expression of checked genes

Lus10029262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.