Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29330 316 / 2e-109 ATERD2, AERD2, ERD2 ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ER lumen protein retaining receptor family protein (.1) AT3G25040 258 / 1e-86 ERD2B endoplasmic reticulum retention defective 2B (.1) AT1G19970 87 / 5e-20 ER lumen protein retaining receptor family protein (.1) AT3G25160 87 / 7e-20 ER lumen protein retaining receptor family protein (.1) AT1G75760 87 / 9e-20 ER lumen protein retaining receptor family protein (.1) AT4G38790 84 / 8e-19 ER lumen protein retaining receptor family protein (.1) AT2G21190 84 / 1e-18 ER lumen protein retaining receptor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022785 [exp] 260 / 2e-87 AT3G25040 382 / 9e-137 endoplasmic reticulum retention defective 2B (.1) Lus10011846 [exp] 249 / 3e-83 AT3G25040 364 / 7e-130 endoplasmic reticulum retention defective 2B (.1) Lus10043149 [exp] 242 / 2e-80 AT3G25040 332 / 2e-117 endoplasmic reticulum retention defective 2B (.1) Lus10007314 [exp] 174 / 4e-55 AT1G29330 179 / 2e-58 ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ER lumen protein retaining receptor family protein (.1) Lus10021097 [exp] 92 / 8e-22 AT1G75760 475 / 8e-172 ER lumen protein retaining receptor family protein (.1) Lus10007570 [exp] 92 / 1e-21 AT4G38790 466 / 2e-168 ER lumen protein retaining receptor family protein (.1) Lus10017213 [exp] 91 / 4e-21 AT1G75760 481 / 5e-174 ER lumen protein retaining receptor family protein (.1) Lus10026285 [exp] 88 / 4e-20 AT4G38790 473 / 7e-171 ER lumen protein retaining receptor family protein (.1) Lus10012176 [exp] 87 / 1e-19 AT2G21190 397 / 2e-140 ER lumen protein retaining receptor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G071200 [exp] 297 / 5e-102 AT1G29330 341 / 1e-120 ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ER lumen protein retaining receptor family protein (.1) Potri.017G056000 [exp] 268 / 1e-90 AT3G25040 383 / 3e-137 endoplasmic reticulum retention defective 2B (.1) Potri.001G315800 [exp] 266 / 4e-90 AT3G25040 355 / 3e-126 endoplasmic reticulum retention defective 2B (.1) Potri.004G167400 [exp] 98 / 7e-24 AT4G38790 472 / 1e-170 ER lumen protein retaining receptor family protein (.1) Potri.009G128900 [exp] 97 / 1e-23 AT2G21190 476 / 2e-172 ER lumen protein retaining receptor family protein (.1) Potri.002G022300 [exp] 92 / 9e-22 AT1G75760 464 / 2e-167 ER lumen protein retaining receptor family protein (.1) Potri.002G246700 [exp] 84 / 1e-18 AT3G25160 400 / 5e-142 ER lumen protein retaining receptor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF00810 [flax] [poplar] ER_lumen_recept ER lumen protein retaining receptor
Representative CDS sequence Show only first row Show all	>Lus10029263 pacid=23139939 polypeptide=Lus10029263 locus=Lus10029263.g ID=Lus10029263.BGIv1.0 annot-version=v1.0 ATGAATATCTTCAGATTCCTCGGTGACATGACTCACCTGATCAGCATCCTAATCCTTCTCCTCAAAATCTACGCCACCAAATCTTGCTCAGGTTGCAATC GCGCGAAATTGTTAGTCGAGCTGCGTTGGATTAGGAGGAAAACCTATTTGATTCATTTAGTTTTGCTTGAGCTAACGGCCATTGTGATGCGTTTTTTTCT AGGGGTTTCAAGGAAGACCCAGGAGCTGTACGCGCTGGTGTTCCTGGCGAGGTACTTGGATCTGTTCACCACCTTTGTGTCCGTATACAACTCTGTTATG AAGGTTGTGTTCGTAGCCAGCAGTCTCGCCATTGTCTGGTGCATGCGGAGGCATCCGCTCGTTCGTCGTTCTTACGATAAGGACCTCGATACCTTCCGTC ACTATTTCCTCGTTGGTGGGAGCTTTGTGCTGGCACTCTTGTGGCACGAGAAGTTCACGTTTCAGGAGATCTTCTGGGCCTTCTCAATATATTTGGAAGC AGTGGCTATCCTTCCTCAGTTAGTGTTGCTCCAAAGAAGCGGGAATGTTGATAACTTAACAGGGCAATATGTCATCTTCCTTGGGGCTTACCGTGGACTC TACATCTTGAATTGGATCTATCGTTACGTGACTGAGGCACATTTTGGTCGTTGGATTGCTGTTGTCTCTGGTGTCATCCAAACAGCCTTGTACGCCGACT TCTTCTACTACTACTTCATGAGGTACTTGGAAGAACAAGACGAAGCTCCAGCTGCCAGCTTGAATCCGAACATACTTCAAGCGAAGGTTGCATATCTTAT AAGCGTTTTTGAGGGGGTGAGATTGGATCCTTTGGCGTCTGGTAGAGTAGAAAAATTCTAG
AA sequence Show only first row Show all	>Lus10029263 pacid=23139939 polypeptide=Lus10029263 locus=Lus10029263.g ID=Lus10029263.BGIv1.0 annot-version=v1.0 MNIFRFLGDMTHLISILILLLKIYATKSCSGCNRAKLLVELRWIRRKTYLIHLVLLELTAIVMRFFLGVSRKTQELYALVFLARYLDLFTTFVSVYNSVM KVVFVASSLAIVWCMRRHPLVRRSYDKDLDTFRHYFLVGGSFVLALLWHEKFTFQEIFWAFSIYLEAVAILPQLVLLQRSGNVDNLTGQYVIFLGAYRGL YILNWIYRYVTEAHFGRWIAVVSGVIQTALYADFFYYYFMRYLEEQDEAPAASLNPNILQAKVAYLISVFEGVRLDPLASGRVEKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29330		ATERD2, AERD2, ...	ARABIDOPSIS THALIANA ENDOPLASM...		Lus10029263 [exp]	0	1
AT3G45230			hydroxyproline-rich glycoprote...		Lus10037404 [exp]	6.1	0.8607
AT3G44150			unknown protein		Lus10016181 [exp]	7.2	0.8546
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031845 [exp]	12.7	0.8388
AT1G29330		ATERD2, AERD2, ...	ARABIDOPSIS THALIANA ENDOPLASM...		Lus10007314 [exp]	18.6	0.7460
AT5G66280		GMD1	"GDP-D-mannose 4,6-dehydratase...		Lus10028373 [exp]	21.1	0.8148
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Lus10002385 [exp]	21.4	0.8058
AT1G27970		NTF2B	nuclear transport factor 2B (....		Lus10037033 [exp]	21.4	0.8092
AT2G18840			Integral membrane Yip1 family ...		Lus10006966 [exp]	22.1	0.8190
AT4G25680			PPPDE putative thiol peptidase...		Lus10027510 [exp]	24.0	0.7985
AT1G12000			Phosphofructokinase family pro...		Lus10038700 [exp]	24.4	0.8092

Compare expression of checked genes

Lus10029263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.