Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29340 417 / 2e-141 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT5G01830 169 / 6e-47 ARM repeat superfamily protein (.1) AT1G60190 140 / 8e-37 AtPUB19 plant U-box 19, ARM repeat superfamily protein (.1) AT3G46510 114 / 9e-28 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G10560 109 / 6e-26 ATPUB18 ARABIDOPSIS THALIANA PLANT U-BOX 18, plant U-box 18 (.1) AT3G54850 97 / 8e-22 ATPUB14 plant U-box 14 (.1) AT5G42340 87 / 1e-18 PUB15 Plant U-Box 15 (.1) AT2G28830 86 / 6e-18 AtPUB12 PLANT U-BOX 12 (.1) AT1G71020 80 / 3e-16 ARM repeat superfamily protein (.1.2) AT1G23030 78 / 2e-15 PUB11 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007317 [exp] 649 / 0 AT1G29340 899 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Lus10025244 [exp] 211 / 2e-62 AT5G01830 765 / 0.0 ARM repeat superfamily protein (.1) Lus10006090 [exp] 209 / 9e-62 AT5G01830 764 / 0.0 ARM repeat superfamily protein (.1) Lus10007511 [exp] 175 / 5e-49 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10017444 [exp] 171 / 1e-47 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10029163 [exp] 147 / 4e-39 AT1G60190 571 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10030628 [exp] 130 / 5e-33 AT1G60190 553 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10013001 [exp] 120 / 1e-29 AT1G60190 562 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10030862 [exp] 115 / 7e-28 AT1G60190 522 / 1e-177 plant U-box 19, ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G071400 [exp] 491 / 3e-170 AT1G29340 888 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.004G061800 [exp] 471 / 3e-162 AT1G29340 833 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.016G134000 [exp] 196 / 5e-57 AT5G01830 702 / 0.0 ARM repeat superfamily protein (.1) Potri.006G107600 [exp] 187 / 7e-54 AT5G01830 729 / 0.0 ARM repeat superfamily protein (.1) Potri.010G185900 [exp] 174 / 8e-49 AT3G46510 335 / 2e-105 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G071600 [exp] 173 / 2e-48 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.015G074200 [exp] 167 / 2e-46 AT1G60190 501 / 2e-169 plant U-box 19, ARM repeat superfamily protein (.1) Potri.012G078900 [exp] 160 / 5e-44 AT1G60190 513 / 3e-174 plant U-box 19, ARM repeat superfamily protein (.1) Potri.010G226500 [exp] 105 / 8e-25 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.001G238500 [exp] 105 / 9e-25 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10029266 pacid=23139873 polypeptide=Lus10029266 locus=Lus10029266.g ID=Lus10029266.BGIv1.0 annot-version=v1.0 ATGGCAACGGCGGCGATATTCTCCTCAATCAGGCGGCGGAGATCCCCTTCACTAGAGGCGTTCCTAGCGCCGGTGGACTTAAACGACGTCGCTTTGTTAC AGACTCTGGCGACAGTAGCAGGGGAGCTGGTCAGCTGTTTCTCGGGAAAGTCAACCTTCTTCCAGCGGCGGAATTCCCGCTCCTTAATCCGTAAGATCGA AGTGTTCCTTGTACTGCTAGATTACTTGAACGATTCATATGGCGGTTCTGTTTCATCTCTGCCGTCAAACGCCGTTGTTTGCTTGAAGGAGCTTTACCTG GTGTTGTACCGCTCGAAAATCCTGCTGGATTACTGCGTCCAGTCGAGTAAGTTATGGCTCTTGTTGCAGAATCAGTCGATTTCGGGTCATTTCCATGATT TGAATCAGGAGATTTTGACTTTGCTTGATGTTTTCCCTCTCTGGGAAGTGAAATTGAGCTTGGATGTTAGGGAACAGATTGAGCTGATTCACAGGCAATC CAAGAGGGCTAATTTGTTGATTGATAAGAAGGATGAAACCCTAAGGTTGGAATTTTACTCCTTCCTTGACCGGTTCGAGAAAGGGGAGATTCCGGTTGGG TCTGAATTCAGATGTTTCTTTGTGGAGAGATTAGGGATTCGTGATGCCAAGAGCTGCAGGGATGAGATTGAGTTCTTGGAAGAGCAGATTGTGAGTCACG ATGGAGATGTTGAGCCGACTGCTTCGGTGCTTAATGGATTTGTCGCAATCGTGAGGTATTCGAGGTTCTTGCTGTTCGGGTTTGATGGCTCGAACGATGA GGAGGAATTGCAGATTGGTGGGAGGAGGAGGGGGATGAAGCAGCGGAGGAAGAGGAGAGGGCTGATTACTCGGGAGATTGCGGAGACTTTCGCTACAATT CCGAAGGACTTCTGCTGTCCGATTTCGCTCGATTTGATGCGCGATCCGGTGATCATCTCCACGGGGCAGACTTATGATCGGAGCTCGATTTCAAGATGGA TGGAGGAAGGGCATTGCAGCTGTCCGAAAACCGGGCAGGTGGTTTCGCGTGGAGGCTAA
AA sequence Show only first row Show all	>Lus10029266 pacid=23139873 polypeptide=Lus10029266 locus=Lus10029266.g ID=Lus10029266.BGIv1.0 annot-version=v1.0 MATAAIFSSIRRRRSPSLEAFLAPVDLNDVALLQTLATVAGELVSCFSGKSTFFQRRNSRSLIRKIEVFLVLLDYLNDSYGGSVSSLPSNAVVCLKELYL VLYRSKILLDYCVQSSKLWLLLQNQSISGHFHDLNQEILTLLDVFPLWEVKLSLDVREQIELIHRQSKRANLLIDKKDETLRLEFYSFLDRFEKGEIPVG SEFRCFFVERLGIRDAKSCRDEIEFLEEQIVSHDGDVEPTASVLNGFVAIVRYSRFLLFGFDGSNDEEELQIGGRRRGMKQRRKRRGLITREIAETFATI PKDFCCPISLDLMRDPVIISTGQTYDRSSISRWMEEGHCSCPKTGQVVSRGG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Lus10029266 [exp]	0	1
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007317 [exp]	1.4	0.8493
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10020995 [exp]	3.9	0.8182
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10031695 [exp]	4.7	0.8353
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10031117 [exp]	6.9	0.8149
AT1G12420		ACR8	ACT domain repeat 8 (.1)		Lus10007004 [exp]	7.1	0.8073
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10006570 [exp]	9.6	0.8233
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10023212 [exp]	14.0	0.8274
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10037994 [exp]	14.3	0.8036
AT4G31080			Protein of unknown function (D...		Lus10009547 [exp]	14.4	0.8020
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10034672 [exp]	15.0	0.8006

Compare expression of checked genes

Lus10029266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.