Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29340 271 / 3e-86 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT2G23140 111 / 1e-27 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G67340 110 / 3e-27 ARM repeat superfamily protein (.1) AT1G23030 101 / 3e-24 PUB11 ARM repeat superfamily protein (.1) AT1G71020 97 / 5e-23 ARM repeat superfamily protein (.1.2) AT3G46510 96 / 2e-22 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT5G01830 96 / 4e-22 ARM repeat superfamily protein (.1) AT3G54790 94 / 1e-21 ARM repeat superfamily protein (.1.2) AT2G28830 92 / 4e-21 AtPUB12 PLANT U-BOX 12 (.1) AT3G54850 87 / 3e-19 ATPUB14 plant U-box 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007317 [exp] 424 / 4e-145 AT1G29340 899 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Lus10019308 [exp] 107 / 4e-26 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011514 [exp] 107 / 4e-26 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10007511 [exp] 104 / 5e-25 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10043471 [exp] 101 / 3e-24 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 100 / 8e-24 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10024899 [exp] 100 / 1e-23 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10017444 [exp] 100 / 2e-23 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10006090 [exp] 99 / 4e-23 AT5G01830 764 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G071400 [exp] 305 / 2e-99 AT1G29340 888 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.004G061800 [exp] 269 / 2e-85 AT1G29340 833 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) Potri.007G051000 [exp] 109 / 7e-27 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G144700 [exp] 108 / 2e-26 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.010G185900 [exp] 106 / 6e-26 AT3G46510 335 / 2e-105 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.010G113900 [exp] 105 / 1e-25 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.008G128600 [exp] 104 / 3e-25 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.008G071600 [exp] 103 / 4e-25 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.005G225400 [exp] 102 / 1e-24 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.016G134000 [exp] 100 / 1e-23 AT5G01830 702 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF05804 [flax] [poplar] KAP Kinesin-associated protein (KAP)
Representative CDS sequence Show only first row Show all	>Lus10029267 pacid=23139848 polypeptide=Lus10029267 locus=Lus10029267.g ID=Lus10029267.BGIv1.0 annot-version=v1.0 ATGCTGAACTTGTCGATCTACGACAAGAACAAGAGCCGGATTATGGACGAAGAAGGATGTCTGCGATCGATCGTCGAGGTGCTGAGATTCGGTCTATCTA CCGAAGGGAAGGAAAACGCCGCGGCAACTTTGTTTAGCTTATCAGCGGTTCACGACTACAAGAAGAGGATAGCGAACGAAGGGGGAGCGGTCGAAGCTCT GGCCGAGATGCTTAGGTACGGGACGCCACGTGGGAAGAAGGACGCTGTGACGGCATTGTTCAATTTGTCGACACATTCAGAGAATTGTGCTAGAATGATC CAATCGGGGGCAGTGGCCGCATTGGTCGTGGCGCTAGGAAACGACGGGGTGGCAGAGGAAGCCGCCGGCGCGCTGGCATTGATCTTGCGACAGCCGTTGG GGACCGAAGCAGTCGTTAAGGAGGACGACGCTTTGTCCGGATTGATAACGATGATGAGGTGCGGAACACCGAGAGGGAAAGAGAATGCGGTAGCGGCATT GCTCGAGCTTTGCAAGTGCGGCGGAGCAGCAGCAACGGAGAGAGTGTTAAAGGCACCGACTTTGGCCGGCTTGGTGCATACCCTTTTGTTCACGGGCACT AAGAGGGCTAGGAGGAAGGCTGCTTCGCTAGCTCGAGTGTTTCAAAGGTGCGAAAATCGGGACGCGTTGAGGCTCATACCGTTCGCTGCATCGCAGGTAC AGAACTCCAGTGCGAACCGGGATTCAAATTTTGTTGGGGATGTATCTGTTCATATGGCAATTTCAGTTCCTGTTCTGTAG
AA sequence Show only first row Show all	>Lus10029267 pacid=23139848 polypeptide=Lus10029267 locus=Lus10029267.g ID=Lus10029267.BGIv1.0 annot-version=v1.0 MLNLSIYDKNKSRIMDEEGCLRSIVEVLRFGLSTEGKENAAATLFSLSAVHDYKKRIANEGGAVEALAEMLRYGTPRGKKDAVTALFNLSTHSENCARMI QSGAVAALVVALGNDGVAEEAAGALALILRQPLGTEAVVKEDDALSGLITMMRCGTPRGKENAVAALLELCKCGGAAATERVLKAPTLAGLVHTLLFTGT KRARRKAASLARVFQRCENRDALRLIPFAASQVQNSSANRDSNFVGDVSVHMAISVPVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Lus10029267 [exp]	0	1
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007317 [exp]	1.0	0.9093
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10009925 [exp]	3.2	0.8793
					Lus10039856 [exp]	3.5	0.8370
AT5G15710			Galactose oxidase/kelch repeat...		Lus10031955 [exp]	5.5	0.8207
AT4G17940			Tetratricopeptide repeat (TPR)...		Lus10022877 [exp]	6.3	0.8003
					Lus10018622 [exp]	6.9	0.8508
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10038221 [exp]	6.9	0.8272
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10012224 [exp]	8.4	0.8374
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025397 [exp]	10.6	0.8339
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035330 [exp]	11.2	0.8135

Compare expression of checked genes

Lus10029267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.