Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18880 46 / 6e-07 HSF AT-HSFA4A ,HSF A4A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007318 [exp] 135 / 2e-39 AT4G18880 355 / 3e-120 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Lus10015237 [exp] 88 / 7e-22 AT4G18880 363 / 9e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Lus10005420 [exp] 72 / 7e-16 AT4G18880 348 / 1e-116 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G071700 [exp] 74 / 6e-17 AT4G18880 400 / 4e-138 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.004G062300 [exp] 69 / 7e-15 AT4G18880 382 / 1e-130 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.014G141400 [exp] 44 / 4e-06 AT4G18880 251 / 4e-79 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.013G079800 [exp] 39 / 0.0001 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029268 pacid=23139898 polypeptide=Lus10029268 locus=Lus10029268.g ID=Lus10029268.BGIv1.0 annot-version=v1.0 ATGAACTCCGAACCTAATGTACTTGTGTCTGCAGAGCTCACTAGTCCTTCCACCGAACCGTCACCTGGAGGAACAACTGGATCCGGGGTGAATGATGTGT TCTGGGAGCAATTGTTGACAGAGAATCCTGGATCAGGTGTTGCGGAAGAAGCTGAGTCGGAAAACTCTGATTCGGATGGTAGTCGGAGAAACGACATCAT CAAACCTATTGATCACGGAAGAAACTGGTGGAATATAAGGAATGTAAATAGTCTTGCAGGACACATCGGACCTCTTACACCTGCTGGAAGAACTTGA
AA sequence Show only first row Show all	>Lus10029268 pacid=23139898 polypeptide=Lus10029268 locus=Lus10029268.g ID=Lus10029268.BGIv1.0 annot-version=v1.0 MNSEPNVLVSAELTSPSTEPSPGGTTGSGVNDVFWEQLLTENPGSGVAEEAESENSDSDGSRRNDIIKPIDHGRNWWNIRNVNSLAGHIGPLTPAGRT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029268 [exp]	0	1
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10007318 [exp]	1.0	0.9937
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029269 [exp]	2.0	0.9812
AT3G55520			FKBP-like peptidyl-prolyl cis-...		Lus10040280 [exp]	2.8	0.9473
AT1G11905			B-cell receptor-associated pro...		Lus10000048 [exp]	3.5	0.9506
AT1G11340			S-locus lectin protein kinase ...		Lus10013244 [exp]	3.9	0.9467
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10014418 [exp]	5.7	0.9368
AT4G27740			Yippee family putative zinc-bi...		Lus10023244 [exp]	6.5	0.9280
AT3G49200			O-acyltransferase (WSD1-like) ...		Lus10019840 [exp]	6.9	0.9209
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10023921 [exp]	7.5	0.9428
AT4G36520			Chaperone DnaJ-domain superfam...		Lus10007394 [exp]	7.7	0.9282

Compare expression of checked genes

Lus10029268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.