Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29800 653 / 0 RING/FYVE/PHD-type zinc finger family protein (.1.2) AT3G43230 356 / 7e-118 RING/FYVE/PHD-type zinc finger family protein (.1) AT1G20110 58 / 1e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G61690 51 / 2e-06 phosphoinositide binding (.1) AT3G14270 50 / 4e-06 FAB1B FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT4G33240 49 / 1e-05 FAB1A FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) AT3G47660 46 / 7e-05 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G23270 43 / 0.0005 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007320 [exp] 964 / 0 AT1G29800 709 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Lus10027659 [exp] 342 / 1e-112 AT3G43230 654 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10039922 [exp] 335 / 1e-109 AT3G43230 661 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10013571 [exp] 60 / 4e-09 AT1G20110 650 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017277 [exp] 59 / 5e-09 AT1G20110 654 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10007623 [exp] 53 / 3e-07 AT1G61690 354 / 6e-113 phosphoinositide binding (.1) Lus10018391 [exp] 52 / 9e-07 AT1G61690 838 / 0.0 phosphoinositide binding (.1) Lus10038127 [exp] 47 / 4e-05 AT4G33240 1429 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10038129 [exp] 47 / 4e-05 AT3G14270 1144 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G062500 [exp] 716 / 0 AT1G29800 729 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Potri.011G071900 [exp] 696 / 0 AT1G29800 744 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Potri.011G106700 [exp] 633 / 0 AT1G29800 703 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Potri.006G135800 [exp] 339 / 8e-112 AT3G43230 649 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.018G064200 [exp] 336 / 4e-110 AT3G43230 649 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.002G018900 [exp] 59 / 5e-09 AT1G20110 566 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.005G242700 [exp] 57 / 1e-08 AT1G20110 555 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G032200 [exp] 55 / 1e-07 AT1G61690 773 / 0.0 phosphoinositide binding (.1) Potri.004G030500 [exp] 51 / 2e-06 AT1G61690 634 / 0.0 phosphoinositide binding (.1) Potri.001G163200 [exp] 48 / 2e-05 AT3G14270 2134 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04366 [flax] [poplar] Ysc84 Las17-binding protein actin regulator CL0390 [flax] [poplar] zf-FYVE-PHD PF01363 [flax] [poplar] FYVE FYVE zinc finger
Representative CDS sequence Show only first row Show all	>Lus10029271 pacid=23139972 polypeptide=Lus10029271 locus=Lus10029271.g ID=Lus10029271.BGIv1.0 annot-version=v1.0 ATGGAGGGCAGCGGCAAGAGCTCGGGTTCTTATCCTCAAGTTGAAAGAATCCATGACTTGGATTGCAGCGAAGCTCCTGATTTGTCCCGCCATGGTCAAT CCTTCCAATCCCAGGATTCCATTTCCCATCTGGATAATGGAGGACTTGAAAATTTCAACTATAATGATGCAAAGACTGAAGAATCTGATACTATTCAAGG GAATGATGAGAAGAAGCAGGGCAAATATTTCTATTACGACTCCCCGCATTACGAAGATACCGGACCATGGATACCGGTTTCTGTTCCGCCTAGGTTAGAA GGCGATCAAGAAGAATGGGCTAAAGGGTTCCACTTCGACGGTGATTACTTACCCGAAAGTGATTTGGGGTGGAGCCAGTTCGTCGGAGGAGAAAAGGAGT TGACCATGTGGGATGTGGTCCTTGAAATGCTGCTTGCTGCTCGTGGCAAAGTCAACGCTATTGCCTCTGGTGATATTCAGAAGTCCAGCATTGCGTGGAT ATCGAACCAGCTTTTGGAACAAGCTTGGAAAGAGATGGCTCATACATTGACGGAGGCAAATTTCGGCAATTCTAGGGAAATGCTCGAAGCCGAGCCGCCA AGGTGGCTTGCTGACAGCACTGCCTCGGCTTGTATGCTGTGTGGAGTCCGGTTTCATCCGATCATGTGCTCGAGGCACCACTGTAGGTTCTGCGGGGGGA TATTTTGTGGTCAATGCTCGAAAGGTAGGAGCTTGATGCCGGGAAAGTTTCGGACTGCGAATCCTGAACGAGTGTGTGATGTTTGCTGTGTGAAGTTGGA GTCTGTTCAGCCATATTTGATGGATCAAGTTAGCCATGCTGCTCAGTTGCCGACATGTGATGTTACAGATCTTAGTACTTTGAGGTCGTGGGTTAATTTC CCGTGGGGACAGACGATGGAGTATGAGATTTATAAGGCTGCAAACACTATTAAAGGTTACAATAAGGTGGGTCGTCTGAAAGCTGAGAAATCGATTCCGG ATACCATTCTACGGCAAGCAAAAGGCCTCGCAATCATTACAGTAGTAAAAGTTGGAGTGGTTGTTACATACAACATCGGCACTGGTCTCGTAATTGCTCG CAGACAAGACGGTTCGTGGTCTCCACCATCAACCATTTCTTCGTTTGGCATGGGTTGGGGAGCTCAGGCAGGAGGTGAATTGACAGATTTCATCATTGTG TTGAGAACTACTGAAGCAGTGAAGACATTTTGCGGGAACGCCCATCTCTCGTTTGGCGCTGGTGTGAGCGCAGCAGCTGGAGCCTTTGGTCGTGTAGTCG AAGCTGATCTTAGAGCCGGTGATGGTGGTTATGCCGCTTGTTACACCTACAGCTGTAGCAAAGGAGCCTTTGTTGGATGCTCACTCGAAAGCAGCATCGT TACCACACGTTCCAAAGAGAATTCCAGGTTCTACGGAAGCCAATCTTTAAGCGCTTCCGATATACTACTCGGCCCTCTCCCCAGACCGCCCGCTGCTGCC ATTCTTTATCGAGAACTTGACGATCTGTATCGCAAGCTTGAAGATTGA
AA sequence Show only first row Show all	>Lus10029271 pacid=23139972 polypeptide=Lus10029271 locus=Lus10029271.g ID=Lus10029271.BGIv1.0 annot-version=v1.0 MEGSGKSSGSYPQVERIHDLDCSEAPDLSRHGQSFQSQDSISHLDNGGLENFNYNDAKTEESDTIQGNDEKKQGKYFYYDSPHYEDTGPWIPVSVPPRLE GDQEEWAKGFHFDGDYLPESDLGWSQFVGGEKELTMWDVVLEMLLAARGKVNAIASGDIQKSSIAWISNQLLEQAWKEMAHTLTEANFGNSREMLEAEPP RWLADSTASACMLCGVRFHPIMCSRHHCRFCGGIFCGQCSKGRSLMPGKFRTANPERVCDVCCVKLESVQPYLMDQVSHAAQLPTCDVTDLSTLRSWVNF PWGQTMEYEIYKAANTIKGYNKVGRLKAEKSIPDTILRQAKGLAIITVVKVGVVVTYNIGTGLVIARRQDGSWSPPSTISSFGMGWGAQAGGELTDFIIV LRTTEAVKTFCGNAHLSFGAGVSAAAGAFGRVVEADLRAGDGGYAACYTYSCSKGAFVGCSLESSIVTTRSKENSRFYGSQSLSASDILLGPLPRPPAAA ILYRELDDLYRKLED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29800			RING/FYVE/PHD-type zinc finger...		Lus10029271 [exp]	0	1
AT4G32940		GAMMAVPE, GAMMA...	gamma vacuolar processing enzy...		Lus10024446 [exp]	2.0	0.8939
AT5G50430		UBC33	ubiquitin-conjugating enzyme 3...		Lus10003932 [exp]	3.7	0.8914
AT1G02070			unknown protein		Lus10015899 [exp]	3.7	0.8677
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Lus10022486 [exp]	4.9	0.8676
AT3G46170			NAD(P)-binding Rossmann-fold s...		Lus10006699 [exp]	5.7	0.8610
AT5G50720		ATHVA22E	ARABIDOPSIS THALIANA HVA22 HOM...		Lus10032557 [exp]	6.0	0.8592
AT5G01800			saposin B domain-containing pr...		Lus10022750 [exp]	6.0	0.8799
AT1G71950			Proteinase inhibitor, propepti...		Lus10038252 [exp]	7.3	0.8722
AT5G39250			F-box family protein (.1)		Lus10032969 [exp]	8.1	0.8569
AT1G75380		ATBBD1	bifunctional nuclease in basal...		Lus10024277 [exp]	8.4	0.8735

Compare expression of checked genes

Lus10029271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.