Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45700 171 / 1e-51 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29780 140 / 2e-40 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29770 142 / 3e-40 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G11860 100 / 1e-24 SSP5 SCP1-like small phosphatase 5 (.1.2.3.4) AT5G46410 99 / 4e-23 SSP4 SCP1-like small phosphatase 4 (.1.2) AT4G18140 96 / 4e-22 SSP4b SCP1-like small phosphatase 4b (.1.2.3) AT3G55960 76 / 2e-15 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G55900 66 / 6e-12 TIM50, EMB1860 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007321 [exp] 523 / 0 AT5G45700 206 / 3e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10015787 [exp] 99 / 7e-23 AT5G11860 410 / 8e-143 SCP1-like small phosphatase 5 (.1.2.3.4) Lus10025376 [exp] 96 / 4e-22 AT5G46410 343 / 2e-114 SCP1-like small phosphatase 4 (.1.2) Lus10004596 [exp] 96 / 7e-22 AT5G46410 398 / 3e-135 SCP1-like small phosphatase 4 (.1.2) Lus10009890 [exp] 81 / 4e-17 AT3G55960 445 / 9e-159 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10014844 [exp] 80 / 5e-17 AT3G55960 441 / 2e-157 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10002484 [exp] 79 / 2e-16 AT3G55960 333 / 2e-114 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10028284 [exp] 76 / 1e-15 AT3G55960 383 / 2e-134 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10032582 [exp] 73 / 2e-14 AT1G55900 378 / 2e-130 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G062900 [exp] 228 / 2e-73 AT5G45700 194 / 1e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.011G072000 [exp] 219 / 3e-70 AT5G45700 230 / 5e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G173700 [exp] 99 / 6e-23 AT5G11860 388 / 2e-133 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.001G353700 [exp] 95 / 1e-21 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2) Potri.011G078300 [exp] 94 / 2e-21 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2) Potri.001G054700 [exp] 90 / 7e-20 AT5G11860 380 / 2e-130 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.006G100800 [exp] 83 / 6e-18 AT3G55960 304 / 6e-103 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.016G116700 [exp] 82 / 8e-18 AT3G55960 248 / 1e-81 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.008G068800 [exp] 81 / 2e-17 AT3G55960 342 / 3e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G188500 [exp] 81 / 2e-17 AT3G55960 406 / 8e-144 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Lus10029273 pacid=23139872 polypeptide=Lus10029273 locus=Lus10029273.g ID=Lus10029273.BGIv1.0 annot-version=v1.0 ATGGGCCGCAAGAGTTGCATCAAGAGATCACCGACGAAATCCGTCAAGGACCTCCGCAGCCAGCGGCGGCGCCACCACCTCCGGAAGAAAACCACCGCCG ACATCTCCACCTCCGCCACCTGTTCAACCGCCTTGGTCTCGTCGATCAGCACAAGGGTATCGAAATACAAGAACCGCCTCCTCCGAATCTTCTCCAAGTT TGCTTCTTTCGTCGTCATCGACACTCCCGGCAGCCGCTACAGGGGATACCAGATCTTGGAGGAAGGAAGGGGAAAACAGAGGATCGCCGAAACAGGGGAC TCTGTTCGTAAAATTATCGTCTTTGACAGCTTCTTACTCCCGGCTACAACCAAGCCGACTGTATTCCTCGACCTCGACGAGACTCTAATCCATTCTTTCC CGGACAGCCAACCGCCGAAATCGTTTGACTTTGTGGTCAGGCCGAAGATCGGAGGCATCGAGACGACTTTCTACGTGCTGAAACGACCCGGTCTGGATGA TTTCTTGTTCCGATTGGCGGAGAGGTTTGAAGTGGTTGTGTTCACCGCCGGATTGGAAGAGTATGCTACTCTGGTTCTGGACGAATTGGATAAGGAGAAA AAGCTGATATCTCATCAGCTTTACCGAGATTCGTGCAGGCAGATCGACGGGATGTACTATGCGAAGGACTTGTCGAGGACAGGGAGGGATTTGAGCAATG CGGTAATCGTTGACGATAATCCGAATTCGTATTCCCTGCAGCCGGAGAATGCGATTCCGGTGCGGCCGTTTGTGGACGATGCAGGGGATGAAGAGTTGAA GGAATTGGGGGAGTTCTTCTTTGGTGAGTGGTTTAGTGGTGGCGGGTTTGATGATGTTAGGGATGCTGTTAAGATGTTTGTTAGTGGGAGGATGAGAGAC AATGTGGGGAGAATTGGTGAGTTGATTTCATAG
AA sequence Show only first row Show all	>Lus10029273 pacid=23139872 polypeptide=Lus10029273 locus=Lus10029273.g ID=Lus10029273.BGIv1.0 annot-version=v1.0 MGRKSCIKRSPTKSVKDLRSQRRRHHLRKKTTADISTSATCSTALVSSISTRVSKYKNRLLRIFSKFASFVVIDTPGSRYRGYQILEEGRGKQRIAETGD SVRKIIVFDSFLLPATTKPTVFLDLDETLIHSFPDSQPPKSFDFVVRPKIGGIETTFYVLKRPGLDDFLFRLAERFEVVVFTAGLEEYATLVLDELDKEK KLISHQLYRDSCRQIDGMYYAKDLSRTGRDLSNAVIVDDNPNSYSLQPENAIPVRPFVDDAGDEELKELGEFFFGEWFSGGGFDDVRDAVKMFVSGRMRD NVGRIGELIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45700			Haloacid dehalogenase-like hyd...		Lus10029273 [exp]	0	1
AT5G45700			Haloacid dehalogenase-like hyd...		Lus10007321 [exp]	1.0	0.9779
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10027331 [exp]	2.8	0.9610
AT4G15830			ARM repeat superfamily protein...		Lus10043416 [exp]	4.9	0.9593
AT5G01910			unknown protein		Lus10014179 [exp]	5.5	0.9566
AT4G02800			unknown protein		Lus10014668 [exp]	7.9	0.9604
AT4G35930			F-box family protein (.1)		Lus10041876 [exp]	8.9	0.9471
AT1G16070	TUB	AtTLP8	tubby like protein 8 (.1.2)		Lus10041617 [exp]	9.2	0.9555
AT5G03870			Glutaredoxin family protein (....		Lus10021353 [exp]	10.5	0.9463
AT2G37960			unknown protein		Lus10021116 [exp]	11.7	0.9498
AT5G67270		ATEB1C, ATEB1H1	ATEB1-HOMOLOG1, MICROTUBULE EN...		Lus10011508 [exp]	11.8	0.9502

Compare expression of checked genes

Lus10029273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.