Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18910 383 / 6e-135 ATNLM2, NIP1;2, NLM2 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) AT4G19030 366 / 3e-128 ATNLM1, AT-NLM1, NLM1, NIP1;1 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) AT5G37820 300 / 2e-102 NIP4;2, NLM5 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) AT5G37810 298 / 7e-102 NIP4;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) AT1G31885 284 / 2e-95 NIP3;1 NOD26-like intrinsic protein 3;1 (.1) AT2G34390 275 / 1e-92 NIP2;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 2;1 (.1) AT4G10380 215 / 8e-69 AtNIP5;1, NIP5;1, NLM6, NLM8 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) AT1G80760 213 / 3e-68 NLM7, NIP6;1 NOD26-like intrinsic protein 6;1 (.1) AT3G06100 160 / 7e-48 NIP7;1, NLM8, NLM6 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1) AT2G29870 117 / 6e-33 Aquaporin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007322 [exp] 358 / 4e-127 AT4G18910 276 / 2e-94 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10035999 [exp] 305 / 7e-105 AT5G37810 343 / 9e-120 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Lus10024066 [exp] 219 / 1e-70 AT1G80760 416 / 2e-147 NOD26-like intrinsic protein 6;1 (.1) Lus10033268 [exp] 215 / 1e-68 AT4G10380 449 / 1e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10010153 [exp] 214 / 3e-68 AT4G10380 450 / 6e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10020929 [exp] 214 / 3e-68 AT4G19030 219 / 6e-70 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) Lus10017358 [exp] 210 / 7e-67 AT4G10380 446 / 2e-159 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10035918 [exp] 200 / 6e-63 AT5G37820 206 / 2e-65 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Lus10025744 [exp] 197 / 4e-62 AT5G37820 207 / 6e-66 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G072100 [exp] 462 / 2e-166 AT4G18910 406 / 3e-144 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.004G063000 [exp] 445 / 6e-160 AT4G18910 386 / 4e-136 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.010G112900 [exp] 315 / 1e-108 AT5G37810 332 / 2e-115 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Potri.017G128200 [exp] 294 / 3e-100 AT5G37820 350 / 3e-122 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Potri.017G083300 [exp] 231 / 2e-75 AT4G18910 229 / 2e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.002G097000 [exp] 227 / 7e-74 AT4G18910 229 / 3e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.011G146900 [exp] 215 / 8e-69 AT4G10380 450 / 4e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.001G046800 [exp] 214 / 1e-68 AT1G80760 371 / 1e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.001G455000 [exp] 214 / 2e-68 AT4G10380 447 / 7e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.003G180900 [exp] 209 / 1e-66 AT1G80760 370 / 2e-129 NOD26-like intrinsic protein 6;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10029274 pacid=23139952 polypeptide=Lus10029274 locus=Lus10029274.g ID=Lus10029274.BGIv1.0 annot-version=v1.0 ATGGCGGAGATCTCGGGTACCAACACCGACAACAACCACGATGTGGTTCTTGACGTCAAGCCGCCGCCGCCGTCGCGATCCTCTTCCATCTTGACCTTCT CCGTCCCCTTCATCCAAAAGATGGTGGCAGAGCTTTTAGGGACATACTTCTTGATATTCGCCGGATGTTCGGCGGTGGCGTCGAATCTTAACTACGACAA AGTGGTGACACTCCCTGGAATCTCAATCGTGTGGGGATTGGCGGTGATGGTTCTCGTTTACTCCCTCGGACACATTTCCGGCGCCCATTTTAACCCCGCC GTCACTCTGGCCTTCGCTACTTGCAAGCGATTCCCCTGGAAAGAAGTTCCGGCGTATATAGCGTGCCAAGTAGCCGGATCGACTATGGCCGCCGGGACAA TCCGGCTGATTTTCCCCGGACATCAGGACCACTTTACCGGAACTCTTCCGGCGGGGCCTGATATGCAGTCCTTTGTTGTCGAGTTCATCATTACGTTCTA CCTTATGTTTGTCATCTCAGGAGTTGCCACTGACAACAGAGCTATTGGTGAACTAGCAGGACTTGCAGTTGGATCAACCGTGCTCCTTAATGTGATGTTT GCAGGGCCGATTTCAGGGGCGTCGATGAACCCAGCTAGGAGCTTGGGCCCGGCGATAGTGTCGCACCAGTATAAAGGGATATGGATATACATGCTGGCTC CCACTCTCGGTGCGCAAGGCGGAGCGTGGGTCTACAACTTCATTCGTTATACTGACAAGCCGTTGCGAGAGATCACCAAGAGTGCTTCCTTCCTCAAGAG CACTGGCCGTTCTTGA
AA sequence Show only first row Show all	>Lus10029274 pacid=23139952 polypeptide=Lus10029274 locus=Lus10029274.g ID=Lus10029274.BGIv1.0 annot-version=v1.0 MAEISGTNTDNNHDVVLDVKPPPPSRSSSILTFSVPFIQKMVAELLGTYFLIFAGCSAVASNLNYDKVVTLPGISIVWGLAVMVLVYSLGHISGAHFNPA VTLAFATCKRFPWKEVPAYIACQVAGSTMAAGTIRLIFPGHQDHFTGTLPAGPDMQSFVVEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMF AGPISGASMNPARSLGPAIVSHQYKGIWIYMLAPTLGAQGGAWVYNFIRYTDKPLREITKSASFLKSTGRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18910		ATNLM2, NIP1;2,...	NOD26-LIKE INTRINSIC PROTEIN 2...		Lus10029274 [exp]	0	1
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10002960 [exp]	1.7	0.8420
AT3G15570			Phototropic-responsive NPH3 fa...		Lus10037848 [exp]	23.2	0.7342
AT5G50175			unknown protein		Lus10019469 [exp]	25.4	0.7645
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10006180 [exp]	37.8	0.7168
AT3G58040		SINAT2	seven in absentia of Arabidops...		Lus10039202 [exp]	39.7	0.7621
AT4G18930			RNA ligase/cyclic nucleotide p...		Lus10002766 [exp]	54.1	0.7734
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Lus10023827 [exp]	62.2	0.7555
AT1G28100			unknown protein		Lus10002573 [exp]	117.2	0.7341
					Lus10023751 [exp]	122.2	0.7003
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Lus10028345 [exp]	172.8	0.7226

Compare expression of checked genes

Lus10029274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.