Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58780 166 / 3e-50 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT4G18960 106 / 2e-27 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT2G42830 103 / 2e-26 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) AT4G09960 101 / 5e-26 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT5G60910 84 / 3e-19 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT2G03710 83 / 4e-19 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G45650 84 / 5e-19 MADS AGL6 AGAMOUS-like 6 (.1) AT1G24260 83 / 7e-19 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT4G11880 82 / 9e-19 MADS AGL14 AGAMOUS-like 14 (.1) AT5G15800 83 / 1e-18 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007324 [exp] 187 / 7e-59 AT4G18960 211 / 7e-69 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Lus10002763 [exp] 124 / 5e-36 AT4G18960 133 / 3e-40 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Lus10008264 [exp] 100 / 9e-25 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10005302 [exp] 100 / 9e-25 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10009481 [exp] 97 / 2e-23 AT4G09960 274 / 1e-92 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10036543 [exp] 84 / 7e-21 AT2G45660 120 / 6e-36 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Lus10026678 [exp] 85 / 1e-19 AT5G15800 225 / 3e-74 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10014144 [exp] 84 / 1e-19 AT4G11880 155 / 4e-48 AGAMOUS-like 14 (.1) Lus10006716 [exp] 84 / 1e-19 AT4G11880 160 / 5e-50 AGAMOUS-like 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G064300 [exp] 115 / 6e-31 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.011G075800 [exp] 107 / 4e-28 AT4G18960 325 / 2e-113 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.019G077200 [exp] 101 / 5e-26 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.013G104900 [exp] 101 / 1e-25 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.003G119700 [exp] 87 / 2e-20 AT4G11880 226 / 4e-75 AGAMOUS-like 14 (.1) Potri.012G062300 [exp] 86 / 1e-19 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.001G112400 [exp] 84 / 2e-19 AT4G22950 253 / 6e-86 AGAMOUS-like 19 (.1) Potri.014G074200 [exp] 84 / 3e-19 AT2G45660 242 / 3e-81 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.014G074100 [exp] 84 / 4e-19 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.001G058400 [exp] 84 / 4e-19 AT1G24260 362 / 8e-128 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10029275 pacid=23139791 polypeptide=Lus10029275 locus=Lus10029275.g ID=Lus10029275.BGIv1.0 annot-version=v1.0 ATGTCCGGCTACCAGAGCGATTCGAGGGGGGATTCGCCATCACAGAGGAAGATTGGGAGAGGGAAGATCGAGATCAAGAGGATCGAGAACACCCAGAATC GGCAGGTGACCTTTTGCAAGAGGAGGAATGGCCTGCTGAAGAAGGCTTATGAATTGTCTGTGCTTTGTGATGCTGAGGTTGCTCTTATTGTCTTCTCCAG CCGTGGTCGCCTCTATGAGTATGCTAACAACAGGGGGTGTTTGGAGAGACAACCTCTTTTGAGTGAGGCCATGTTCTTGTTGACATCAAAGGGAGGAAAT GGTAGAAAAAAAGATTGGAATGGGAAAGGAAATGAAGAAGAAAGTGAAGTACAAATTGTTGTTGAGGTGAAAAAAATGAAAGACTTGTCAGTAACTTGTA AACTTGTCAATATTAGGGTTTTCATTTCCTTACCTAGTGTTAAAGACACAATAGAGAGGTACAAGAAAGCCAATTCAGACTCTACAAACACTGGATCTGT TGCTGAAGCCAATGCTCAGTACTATCAGCAGGAAGCAGCCACGCTAAGGCAGAAAATTGGGAATCTGCTGAATACAAACAGGAAACTTGCTATGTTTGTC AACCATAACAACAACGACGGTGGCGGTGGGGGATCTTCTTCTAGACATATGCCTGGTGAATCACTAGGAGGGCTCGGTCCCAAGGATCTCAAGAACTTGG AGAGCAAACTTGAGAAAGGAATCAGCAGGATCAGATCCAAAAAGAATGAGCTGCTGTTTTCGGAGATAGAGTATATGCAAAAGAGGGTAATTAACTAG
AA sequence Show only first row Show all	>Lus10029275 pacid=23139791 polypeptide=Lus10029275 locus=Lus10029275.g ID=Lus10029275.BGIv1.0 annot-version=v1.0 MSGYQSDSRGDSPSQRKIGRGKIEIKRIENTQNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNRGCLERQPLLSEAMFLLTSKGGN GRKKDWNGKGNEEESEVQIVVEVKKMKDLSVTCKLVNIRVFISLPSVKDTIERYKKANSDSTNTGSVAEANAQYYQQEAATLRQKIGNLLNTNRKLAMFV NHNNNDGGGGGSSSRHMPGESLGGLGPKDLKNLESKLEKGISRIRSKKNELLFSEIEYMQKRVIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58780	MADS	AGL1, SHP1	SHATTERPROOF 1, AGAMOUS-like 1...		Lus10029275 [exp]	0	1
AT5G15800	MADS	AGL2, SEP1	SEPALLATA1, AGAMOUS-like 2, K-...		Lus10034663 [exp]	5.8	0.9943
AT4G18960	MADS	AG	AGAMOUS, K-box region and MADS...		Lus10002763 [exp]	7.5	0.9281
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10015765 [exp]	8.2	0.9940
AT4G18960	MADS	AG	AGAMOUS, K-box region and MADS...		Lus10007324 [exp]	8.2	0.9904
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Lus10031960 [exp]	8.7	0.8689
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10024533 [exp]	10.1	0.9940
					Lus10007546 [exp]	11.7	0.9940
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10015952 [exp]	13.0	0.9940
					Lus10032910 [exp]	13.5	0.8163
					Lus10038594 [exp]	14.3	0.9940

Compare expression of checked genes

Lus10029275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.