Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39050 308 / 4e-100 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT5G39080 296 / 2e-95 HXXXD-type acyl-transferase family protein (.1) AT3G29670 291 / 1e-93 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT3G29635 288 / 1e-92 HXXXD-type acyl-transferase family protein (.1) AT5G61160 283 / 9e-91 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT5G39090 283 / 2e-90 HXXXD-type acyl-transferase family protein (.1) AT3G29590 278 / 5e-89 AT5MAT HXXXD-type acyl-transferase family protein (.1) AT3G29680 252 / 8e-79 HXXXD-type acyl-transferase family protein (.1) AT1G03940 215 / 3e-64 HXXXD-type acyl-transferase family protein (.1) AT1G03495 214 / 3e-64 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033599 [exp] 325 / 3e-106 AT3G29635 307 / 1e-99 HXXXD-type acyl-transferase family protein (.1) Lus10020721 [exp] 325 / 3e-106 AT5G39050 280 / 2e-89 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10021390 [exp] 308 / 6e-100 AT3G29590 283 / 7e-91 HXXXD-type acyl-transferase family protein (.1) Lus10020514 [exp] 308 / 6e-100 AT3G29590 296 / 9e-96 HXXXD-type acyl-transferase family protein (.1) Lus10005362 [exp] 305 / 4e-99 AT3G29635 292 / 4e-94 HXXXD-type acyl-transferase family protein (.1) Lus10035802 [exp] 295 / 4e-94 AT5G39050 276 / 2e-87 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10021389 [exp] 290 / 5e-93 AT3G29590 295 / 4e-95 HXXXD-type acyl-transferase family protein (.1) Lus10021388 [exp] 275 / 4e-87 AT3G29635 278 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Lus10041658 [exp] 260 / 2e-81 AT3G29590 298 / 2e-96 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G094700 [exp] 432 / 8e-149 AT5G39080 315 / 8e-103 HXXXD-type acyl-transferase family protein (.1) Potri.004G109800 [exp] 400 / 3e-136 AT5G39050 368 / 2e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 397 / 6e-135 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109300 [exp] 397 / 7e-135 AT5G39050 365 / 3e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110640 [exp] 397 / 1e-134 AT5G39050 365 / 2e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 394 / 1e-133 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.010G208100 [exp] 391 / 2e-132 AT5G39050 332 / 3e-109 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103200 [exp] 380 / 3e-128 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103100 [exp] 371 / 1e-124 AT5G39050 366 / 1e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103300 [exp] 369 / 6e-124 AT5G39050 352 / 3e-117 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10029276 pacid=23139979 polypeptide=Lus10029276 locus=Lus10029276.g ID=Lus10029276.BGIv1.0 annot-version=v1.0 ATGACCTCCGATTCCATTCCACCACCACCGCCGAAAGTCATACAACTCTTGAAAGTAGCTCCGGCCGCCGAATCACCGGCGTCCGCCACTAAATTCTCCC TCCCGCTCACCTATCTCGACACCGCCTGGTTCAGATTCCCGCCAGTCGAATTGCTCTTCTTTTACAAACCCACTAATTCAATTTTCACTCTTGAGTTCTT CCACTCTGCTCTTCTCCCCAATCTGATCCGATCACTCTCCGAAACCCTCGCTGAGTTCCTCCCTCTCGCCGGCCATCTCCGATGGCCACATCAAACTCCA ATCCCAACCGTAATCTACACTCCAGGCGACGCCGTTTCACTCACAGTCGCCGAATCCGATTCGGAATATTTCGACCGTTTAGCCGGTGATGAGCCTCGTC AAGCCGGCGAGTCCCGTCCATACATCCCTGAATTAGAAATCTCTGAAACCGAAGCTTCAGTAATATCTCTCCAGATTACTAATTTCCCCGGAAAGGGATT CTCCATCGGTCTGATTCTACACCACGCGGTGATCGATGCGAAATCGACAGCCATGTTCCTCAGAGCGTGGTCTTCGATTTGCAGGAATGGCGACGGATAT GCTCGGCTTCCGGAAGAGCTGGCTCCGTCGTTCGATCGGACGGTGGTTAAGGATCCGCTGGATCTGGCGTCCGCCTATTTGAATAAGTGGCTAGCAATTA TGTCTCCAATCAATCCTCGAAGCTTAAACGTTTTCCAAATCCCAGCACCGCCGCCTCCAGATCTTCTCCGAGCGACGTTCAATCTGAGTCCGGAGTCGAT CGGAAAGCTCAGGGAGATGATCGTAAGCTACCGATCGGAGAAATGGAAGCGGATTCATCATCATCTGTCATCCTTCGTGGTTACCTGCGCTTTCATCACC GTCTGCCTGGTGAAAGCCAGAGGTGGCGGAAGAGACAGGGCGGTGTACCTGGTCTGGACGGTGGATTGCCGGAGCAGGTTATTAAAATCGGTACCCGGAA ACTACCTGGGGAACTGCTTGGCGATGGATTACTTGGTGGAAGAATCTGGGAGGTTTATGGAGGAGGACGGGATAGCGGCGGCGGCGGAGAAGATTAGCGA TTTGGTGAGGGCGGCGGCGGAGGTGGATTCGGAAGAGGAGGTGGAGAAGATGGCGAGGTTGAGGCGCGTGGGCCCCGAGGTGCAGAAGGTGGGCGTGGCT GGGTCCCACAAGCTGGGGTTCTATGACGTGGATTTCGGATTGGGGAAGCCGGTGAAGATGGAGACGACGTCGTTGGAGAAGACGCGAGGGATTTCGTTGA CGGAGAGTAGAGACGGAAGCGGCGGGATGGAAGTCAGTGTCGTTTTGGTTAGGCCTGAAATGGATGCTTTCGCTAACTTCTTTGTGGACGGCCTCCGTCG GTCAAGGATGTAG
AA sequence Show only first row Show all	>Lus10029276 pacid=23139979 polypeptide=Lus10029276 locus=Lus10029276.g ID=Lus10029276.BGIv1.0 annot-version=v1.0 MTSDSIPPPPPKVIQLLKVAPAAESPASATKFSLPLTYLDTAWFRFPPVELLFFYKPTNSIFTLEFFHSALLPNLIRSLSETLAEFLPLAGHLRWPHQTP IPTVIYTPGDAVSLTVAESDSEYFDRLAGDEPRQAGESRPYIPELEISETEASVISLQITNFPGKGFSIGLILHHAVIDAKSTAMFLRAWSSICRNGDGY ARLPEELAPSFDRTVVKDPLDLASAYLNKWLAIMSPINPRSLNVFQIPAPPPPDLLRATFNLSPESIGKLREMIVSYRSEKWKRIHHHLSSFVVTCAFIT VCLVKARGGGRDRAVYLVWTVDCRSRLLKSVPGNYLGNCLAMDYLVEESGRFMEEDGIAAAAEKISDLVRAAAEVDSEEEVEKMARLRRVGPEVQKVGVA GSHKLGFYDVDFGLGKPVKMETTSLEKTRGISLTESRDGSGGMEVSVVLVRPEMDAFANFFVDGLRRSRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10029276 [exp]	0	1
AT5G36290			Uncharacterized protein family...		Lus10026995 [exp]	11.9	0.6686
AT1G62620			Flavin-binding monooxygenase f...		Lus10024598 [exp]	14.6	0.6734
AT5G43190			Galactose oxidase/kelch repeat...		Lus10010610 [exp]	21.8	0.6551
AT2G17390		AKR2B	ankyrin repeat-containing 2B (...		Lus10013859 [exp]	46.6	0.6252
AT2G16710			Iron-sulphur cluster biosynthe...		Lus10021368 [exp]	68.6	0.6012
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10033449 [exp]	69.7	0.6006
AT5G50460			secE/sec61-gamma protein trans...		Lus10035206 [exp]	70.1	0.6129
AT5G36290			Uncharacterized protein family...		Lus10020195 [exp]	82.0	0.5929
AT1G79660			unknown protein		Lus10041631 [exp]	90.4	0.5929
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Lus10042450 [exp]	122.9	0.5445

Compare expression of checked genes

Lus10029276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.