Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18950 582 / 0 Integrin-linked protein kinase family (.1) AT3G58760 554 / 0 Integrin-linked protein kinase family (.1) AT2G43850 361 / 2e-120 Integrin-linked protein kinase family (.1.2) AT2G31800 360 / 4e-120 Integrin-linked protein kinase family (.1) AT3G59830 346 / 1e-114 Integrin-linked protein kinase family (.1) AT1G14000 290 / 4e-93 VIK VH1-interacting kinase (.1) AT1G62400 165 / 2e-46 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT2G17700 159 / 7e-43 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G35780 159 / 1e-42 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT3G06640 155 / 1e-40 PAS domain-containing protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008350 [exp] 326 / 2e-105 AT2G31800 753 / 0.0 Integrin-linked protein kinase family (.1) Lus10027107 [exp] 303 / 2e-96 AT2G31800 709 / 0.0 Integrin-linked protein kinase family (.1) Lus10030387 [exp] 291 / 3e-94 AT3G58760 315 / 2e-103 Integrin-linked protein kinase family (.1) Lus10037851 [exp] 286 / 1e-91 AT3G58760 305 / 2e-99 Integrin-linked protein kinase family (.1) Lus10030435 [exp] 284 / 5e-91 AT1G14000 748 / 0.0 VH1-interacting kinase (.1) Lus10026626 [exp] 283 / 9e-91 AT1G14000 748 / 0.0 VH1-interacting kinase (.1) Lus10002765 [exp] 219 / 4e-70 AT4G18950 132 / 1e-37 Integrin-linked protein kinase family (.1) Lus10012517 [exp] 159 / 3e-42 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10022653 [exp] 156 / 7e-42 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G064400 [exp] 654 / 0 AT4G18950 632 / 0.0 Integrin-linked protein kinase family (.1) Potri.017G007800 [exp] 355 / 4e-118 AT2G31800 751 / 0.0 Integrin-linked protein kinase family (.1) Potri.007G142100 [exp] 347 / 1e-114 AT2G43850 726 / 0.0 Integrin-linked protein kinase family (.1.2) Potri.002G158950 [exp] 300 / 2e-97 AT4G18950 305 / 1e-99 Integrin-linked protein kinase family (.1) Potri.008G090800 [exp] 284 / 5e-91 AT1G14000 743 / 0.0 VH1-interacting kinase (.1) Potri.010G164500 [exp] 280 / 3e-89 AT1G14000 757 / 0.0 VH1-interacting kinase (.1) Potri.017G123100 [exp] 202 / 5e-60 AT4G18950 235 / 5e-73 Integrin-linked protein kinase family (.1) Potri.005G106200 [exp] 164 / 3e-44 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.007G060600 [exp] 161 / 3e-43 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 157 / 5e-43 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10029277 pacid=23139950 polypeptide=Lus10029277 locus=Lus10029277.g ID=Lus10029277.BGIv1.0 annot-version=v1.0 ATGGAGGCGAAGAATCCGGTGAGGTTCACACTAGGGAAGCAGTCGTCTTTGGCGCCAGATCGGGAGATTGACGGGTCGGGTTCGTTTGAGGAAGCGATGG AAGGGATTGATCCGGGTGTCCGGTTAATGTACGCAGCTAACGAAGGGAATATTGATGGAATCCAGGAGCTGCTGGATTCGGGTATCGACATCAATTTCAG GGATATTGATAACCGGACTGCTCTTCACATTGCTGCTTGCCAAGGTTTGACCGATGTCACTTCGTTCTTGCTCGACAAAGGTGCCGAAGTTGACGTCAAG GATCGTTGGGGGAGCACGCCTCTTGCGGATGCCATATACTACAAGAACAATGATGTGATCAAGCTTTTGGAGAAGCGTGGTGCGAAGCCTCTGATGGCTC CAATGCATGTCAATCATGCACGTGAGGTTCCGGAATATGAGATCGATCCTGCTGAGCTTGATTTGACTAATAGCGTGCAGATAACTAAGGGAACTTACCG TTTAGCATCATGGCGTGGTATTCAAGTTGCTGTTAAAATGCTTGGGGAGGAAGTGCTATCTGATGAGGAGAAAGTAAAGGCATTCAGAGATGAGCTTGAT CTGCTTCAGAAGATAAGACACCCAAATGTGGTCCAATTTTTGGGTGCTGTTACTCAAAGTAGCCCGATGATGATTGTGACAGAATATCTACCGAAGGGAG ATCTCCGGGAGTATCTTAAACGAAAAGGCCCACTGAGACCAGCAATTGCTGTGAAATTCGCTCTTGATATTGCAAGGGGAATGAATTACCTACACGATAA CAAACGAGCAGCGATAATCCACAGGGATCTTGAGCCTTCAAATATATTGCGGGATGACTCTGGGCATCTCAAAGTCGCTGACTTTGGAGTTAGTAAGTTG CTTACAGTGAAAGATAACAAGCCTCTAACATGCCAGGAGACTTCTTGTAAATTCATGAAAGGATCTATTTTGTTAGGTCGTTATATGGCCCCAGAGGTTT TCAGAAGTGAAGAGTATGATACGAAAGTGGATGTCTTTTCCTTTGCTTTGATACTACAAGAGGCAAGTACTTACCTTTCTAGTGCTCAATTTGGGTCTGA CATCTTTTATGGCAAAATGATCGAAGGCTATCCACCATTTTGCAACAAGCAAGACCCTGAGGTTCTTAAAGCCTATGCTGGAACTGAGCGTCCACCTTTT AAAGCTCCGCCAAAGTATTACGCATATGGTCTTAAAGAGTTGATTGAGAAGTGCTGGCATGAAAATCCAGCTCAACGACCAACTTTCAGGCAAATACTGC CAATACTTGAATCCATTTACAACCGACTCGGTTACAAGAGACGTTGGAAGGTTAGACCCTTCAAATGTTTCCCAACTTTGGACGCCTTGTTGAAGAAAGA CCAGAGTCTAAATGGGAACAGTCGATCTTCTCGTTCTCGTTCTACCAGCCGTGTGTGA
AA sequence Show only first row Show all	>Lus10029277 pacid=23139950 polypeptide=Lus10029277 locus=Lus10029277.g ID=Lus10029277.BGIv1.0 annot-version=v1.0 MEAKNPVRFTLGKQSSLAPDREIDGSGSFEEAMEGIDPGVRLMYAANEGNIDGIQELLDSGIDINFRDIDNRTALHIAACQGLTDVTSFLLDKGAEVDVK DRWGSTPLADAIYYKNNDVIKLLEKRGAKPLMAPMHVNHAREVPEYEIDPAELDLTNSVQITKGTYRLASWRGIQVAVKMLGEEVLSDEEKVKAFRDELD LLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLREYLKRKGPLRPAIAVKFALDIARGMNYLHDNKRAAIIHRDLEPSNILRDDSGHLKVADFGVSKL LTVKDNKPLTCQETSCKFMKGSILLGRYMAPEVFRSEEYDTKVDVFSFALILQEASTYLSSAQFGSDIFYGKMIEGYPPFCNKQDPEVLKAYAGTERPPF KAPPKYYAYGLKELIEKCWHENPAQRPTFRQILPILESIYNRLGYKRRWKVRPFKCFPTLDALLKKDQSLNGNSRSSRSRSTSRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18950			Integrin-linked protein kinase...		Lus10029277 [exp]	0	1
AT4G18950			Integrin-linked protein kinase...		Lus10002765 [exp]	2.4	0.7532
AT3G51430		SSL5, YLS2	YELLOW-LEAF-SPECIFIC GENE 2, S...		Lus10028376 [exp]	2.6	0.7840
AT3G23910			unknown protein		Lus10022568 [exp]	7.7	0.7470
AT5G51180			alpha/beta-Hydrolases superfam...		Lus10032496 [exp]	10.4	0.6819
AT5G17680			disease resistance protein (TI...		Lus10030345 [exp]	10.7	0.7822
AT3G49070			Protein of unknown function (D...		Lus10027501 [exp]	13.6	0.7279
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10039039 [exp]	15.9	0.7311
AT5G17820			Peroxidase superfamily protein...		Lus10020311 [exp]	17.9	0.7049
AT2G17140			Pentatricopeptide repeat (PPR)...		Lus10013832 [exp]	21.5	0.7510
AT5G57580			Calmodulin-binding protein (.1...		Lus10018437 [exp]	22.7	0.7416

Compare expression of checked genes

Lus10029277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.