Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18930 159 / 8e-50 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) AT4G18940 141 / 8e-43 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002767 [exp] 291 / 1e-101 AT4G18930 172 / 4e-55 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) Lus10002766 [exp] 236 / 2e-80 AT4G18930 146 / 4e-45 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G075600 [exp] 218 / 5e-73 AT4G18930 234 / 3e-79 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) Potri.017G062400 [exp] 185 / 7e-60 AT4G18930 201 / 2e-66 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) Potri.001G324500 [exp] 184 / 1e-59 AT4G18930 178 / 2e-57 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0247 [flax] [poplar] 2H PF07823 [flax] [poplar] CPDase Cyclic phosphodiesterase-like protein
Representative CDS sequence Show only first row Show all	>Lus10029278 pacid=23139855 polypeptide=Lus10029278 locus=Lus10029278.g ID=Lus10029278.BGIv1.0 annot-version=v1.0 ATGGAAGCCGCCGCCGCCGGTGACGATAAGAAGAACTTCTACTCCGTGTGGGCGGTCCCACCTGACGACGTCAAGGATCGGCTGAACAAGCTCATGGACG GCCTCAGATCGGAATACCGCGGCACGGCGGCCCAGCCCCACGTCACCGTTATGGGGGCAACATCGCTGACGGAGCAAGATGCCGTCAGCAAGTTCAGATC CGCTTGTGACGGCGTCAAGGCTTATACCGCCGCCGTCGATTGCGTCTCCCCCAAGACCCATTGCCTCTATTTGCTCCTCCGTCCTACCCCCGAGGTTGTG GAAGCTAGCTCACTCTGCTCCGAACATTTTGGGTACAAGAATTCCTCTCCTTACATGCCTCATCTAAGTCTCCTGTACGGTGATCTGAGCGACGAAGAGA AGAAGAAGGCGCAAGAGAAGGCGGTCCAGCTCGACGAAACCATCAATAGCTTTCCGATCAGTCGTCTGGAGCTGTGGAAGACGGATACTGGAGACAAGTC TCTCAAGTCATGGGAGAAGATATCAGAGCACACCCTCACCACAAACTAG
AA sequence Show only first row Show all	>Lus10029278 pacid=23139855 polypeptide=Lus10029278 locus=Lus10029278.g ID=Lus10029278.BGIv1.0 annot-version=v1.0 MEAAAAGDDKKNFYSVWAVPPDDVKDRLNKLMDGLRSEYRGTAAQPHVTVMGATSLTEQDAVSKFRSACDGVKAYTAAVDCVSPKTHCLYLLLRPTPEVV EASSLCSEHFGYKNSSPYMPHLSLLYGDLSDEEKKKAQEKAVQLDETINSFPISRLELWKTDTGDKSLKSWEKISEHTLTTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18930			RNA ligase/cyclic nucleotide p...		Lus10029278 [exp]	0	1
AT4G35220			Cyclase family protein (.1)		Lus10019822 [exp]	1.0	0.8930
AT1G56423			unknown protein		Lus10020695 [exp]	3.0	0.8782
AT1G65280			DNAJ heat shock N-terminal dom...		Lus10014815 [exp]	3.5	0.8471
AT4G27880			Protein with RING/U-box and TR...		Lus10022405 [exp]	7.5	0.8865
AT1G17455		ELF4-L4	ELF4-like 4 (.1.2)		Lus10000371 [exp]	8.1	0.8441
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Lus10018366 [exp]	8.7	0.8423
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10032574 [exp]	10.0	0.8772
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Lus10019349 [exp]	10.5	0.8290
AT4G11660	HSF	AT-HSFB2B, HSFB...	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10038874 [exp]	11.2	0.8364
AT1G30090			Galactose oxidase/kelch repeat...		Lus10028121 [exp]	13.4	0.8697

Compare expression of checked genes

Lus10029278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.