Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29690 842 / 0 CAD1 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) AT4G24290 446 / 1e-150 MAC/Perforin domain-containing protein (.1.2) AT1G28380 392 / 2e-129 NSL1 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) AT1G14780 375 / 6e-123 MAC/Perforin domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002768 [exp] 1025 / 0 AT1G29690 863 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10025153 [exp] 578 / 0 AT1G29690 595 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10035789 [exp] 442 / 6e-149 AT4G24290 911 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10012717 [exp] 419 / 2e-140 AT4G24290 764 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10010894 [exp] 413 / 6e-138 AT4G24290 761 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10025453 [exp] 399 / 2e-132 AT1G28380 745 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Lus10041285 [exp] 388 / 6e-128 AT1G14780 507 / 2e-173 MAC/Perforin domain-containing protein (.1) Lus10037426 [exp] 382 / 1e-125 AT1G14780 514 / 2e-176 MAC/Perforin domain-containing protein (.1) Lus10037363 [exp] 379 / 4e-125 AT4G24290 837 / 0.0 MAC/Perforin domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G064000 [exp] 936 / 0 AT1G29690 901 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.011G075500 [exp] 925 / 0 AT1G29690 890 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.016G135100 [exp] 689 / 0 AT1G29690 717 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.006G107900 [exp] 672 / 0 AT1G29690 703 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.003G006500 [exp] 452 / 3e-153 AT4G24290 922 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.008G136401 [exp] 426 / 3e-143 AT1G14780 691 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.010G104600 [exp] 419 / 3e-140 AT1G14780 697 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.001G305600 [exp] 417 / 2e-139 AT4G24290 783 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.019G001000 [exp] 416 / 5e-139 AT4G24290 780 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.011G057100 [exp] 408 / 4e-136 AT1G28380 790 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF01823 [flax] [poplar] MACPF MAC/Perforin domain
Representative CDS sequence Show only first row Show all	>Lus10029279 pacid=23139988 polypeptide=Lus10029279 locus=Lus10029279.g ID=Lus10029279.BGIv1.0 annot-version=v1.0 ATGAGCCTGAGCTCTAATGCACTGAAGACCACCCTTCAGAACTCAATCCAAGCTTTAGGTAGGGGATTCGATGTCACATCTGACATAAGGCTGCTCTACT GCAAAGGGGCTTCTGGGTCGAGGCTGGTTCGAATCGATGAGGAGAATACCAGGAATCTCATTGCAGGTGGTGATGATGGTGGGGTTGAGGTTGTTGTCCC TGATGCATCTGTTGATGTTGAGTGTTCTAAGGGGAAGAGAAGCATTGAGAGGATTCCTGTTTGCAGCTTCCATGAGATGGCAGAGCAGTTCAATGAGAAA TCTGGGATATCAGGAAAGATACCACTTGGAAGCTTTAATGCCATGTTTAATTTCACTGGTTCATGGCGAGTGGATGCTGCAGCAACGAAATCACTTGCAA TGGTTGGCCATTTCATCCCGCTTTATAAGATCCAACTAGCAAAGGTGAATTTGGTTTTGCAAGAGGAAGTTAAAAAGGCTGTTCCTTATTCATGGGATCC TGCATCCCTTGCAAGCTTCATTGAAAGCTATGGTACCCACATTGTTACATCTGCAACAATTGGTGGAAGAGATGTGGTTTACATCAGGCAGCATCAGTCA TCACCTTTGACAATGACCGACATTGAAACGTATGTGAAGGACATTGCGGATCAACGGTTCCAAGAAAGTTCGACGACATCTGCCCCCCTAAATTATAAGG ACAAGGATGTAACAGTCATTTATAGACGAAGAGGGGGCGACGATCTCGAACAGAGCCACGCGAAATGGGCAGACACGGTTCAATTGGCTCCCGACGTGAT TAACATGACATTTACACCTATAGTGTCCTTACTTCAAGGAGTGCCCGGGATTAAGCACTTAAGCCGTGCAATCGACTTGTACTTAGAATATAAGCCACCG ATCGAAGATCTGCAGTACTTCTTGGATTTCCAGATTGCGCAAGTTTGGGCTCCAGAACAGAATAGCCTCCAAAGGAAAGAGCCTGTTTGTAAATCCCTTC AGTTCAGCTTAATGGGTCCGAAGCTGTATATCAGTCCAGATCAGGTAACAGTAGGGCGTAAACCAGTTACGGGGCTTAGACTAAGCTTAGAAGGTATCAA GCAAAACAGGCTAGCTATCCATTTACAGCATTTGGTGTCACTGCCCAAAATCCTACAGCCGCATTGGGACACGCACATGGCCATTGGCGCGCCCAAATGG CATGGTCCCGAGGAGCAAGACAGCCGTTGGTTCGAGCCTATAAAGTGGAAGAACTTCTCCCATGTCAGCACAGCTCCGATCGAGTACACCGAGACATCCA TCGGAGACCTCTCTGGGGTCCACATTGTCACGGGAGCTCAACTTGGCGTGTGGGAATTTGGTGCAAAGAACGTCCTACACCTCAAGCTCCTCTTCTCCAA AGTCCCCGGATGCACTATTAGGCGTTCGGTATGGGACCACAGTCCTTCAACCCCTAGTGTACAATCATCATTCTCATCATCAGGGTCCTCATCTTCAGGA GGTTCGACGAGTGAGAGAGACGGTTCGAGCCAAGTAGGGAAGCTGATCAAGATCGTTGATATGAGCGAGATGTCGAGGGGGCCACAGGATATACCGGGGC ATTGGTTGGTAACGGGAGCTAAGCTCGGTGTAGACAAGGGGAAGATTGTCTTGCGAGCCAAGTATTCATTGTTGAACTATTAA
AA sequence Show only first row Show all	>Lus10029279 pacid=23139988 polypeptide=Lus10029279 locus=Lus10029279.g ID=Lus10029279.BGIv1.0 annot-version=v1.0 MSLSSNALKTTLQNSIQALGRGFDVTSDIRLLYCKGASGSRLVRIDEENTRNLIAGGDDGGVEVVVPDASVDVECSKGKRSIERIPVCSFHEMAEQFNEK SGISGKIPLGSFNAMFNFTGSWRVDAAATKSLAMVGHFIPLYKIQLAKVNLVLQEEVKKAVPYSWDPASLASFIESYGTHIVTSATIGGRDVVYIRQHQS SPLTMTDIETYVKDIADQRFQESSTTSAPLNYKDKDVTVIYRRRGGDDLEQSHAKWADTVQLAPDVINMTFTPIVSLLQGVPGIKHLSRAIDLYLEYKPP IEDLQYFLDFQIAQVWAPEQNSLQRKEPVCKSLQFSLMGPKLYISPDQVTVGRKPVTGLRLSLEGIKQNRLAIHLQHLVSLPKILQPHWDTHMAIGAPKW HGPEEQDSRWFEPIKWKNFSHVSTAPIEYTETSIGDLSGVHIVTGAQLGVWEFGAKNVLHLKLLFSKVPGCTIRRSVWDHSPSTPSVQSSFSSSGSSSSG GSTSERDGSSQVGKLIKIVDMSEMSRGPQDIPGHWLVTGAKLGVDKGKIVLRAKYSLLNY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29690		CAD1	constitutively activated cell ...		Lus10029279 [exp]	0	1
AT4G24160			alpha/beta-Hydrolases superfam...		Lus10024310 [exp]	5.1	0.8160
AT3G29770		ATMES11	ARABIDOPSIS THALIANA METHYL ES...		Lus10013193 [exp]	5.3	0.7388
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10018408 [exp]	10.2	0.7723
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10035262 [exp]	11.2	0.7838
AT5G47530			Auxin-responsive family protei...		Lus10006398 [exp]	11.5	0.7849
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10023838 [exp]	16.6	0.7704
AT4G39830			Cupredoxin superfamily protein...		Lus10022504 [exp]	19.4	0.7615
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10034897 [exp]	22.4	0.7674
AT5G07100	WRKY	WRKY26	WRKY DNA-binding protein 26 (....		Lus10042243 [exp]	23.0	0.7831
					Lus10009375 [exp]	24.0	0.6377

Compare expression of checked genes

Lus10029279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.