Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29670 301 / 8e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 288 / 1e-95 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 287 / 4e-95 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 280 / 2e-92 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G33811 279 / 6e-92 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19010 271 / 3e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G19050 263 / 4e-86 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 255 / 2e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G19060 252 / 1e-81 SGNH hydrolase-type esterase superfamily protein (.1) AT5G08460 243 / 1e-77 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002770 [exp] 647 / 0 AT1G29670 307 / 2e-100 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012002 [exp] 496 / 2e-177 AT5G45670 295 / 5e-98 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002773 [exp] 476 / 2e-169 AT5G45670 283 / 1e-93 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029281 [exp] 444 / 5e-157 AT1G29670 270 / 3e-88 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002772 [exp] 429 / 4e-151 AT1G29670 275 / 4e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 295 / 3e-98 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 295 / 4e-98 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 293 / 1e-97 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 290 / 3e-96 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G008902 [exp] 323 / 2e-109 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005402 [exp] 322 / 7e-109 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008906 [exp] 321 / 1e-108 AT1G29670 345 / 1e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008406 [exp] 321 / 2e-108 AT1G29670 342 / 2e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008000 [exp] 320 / 3e-108 AT1G29670 347 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G008402 [exp] 319 / 9e-108 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005400 [exp] 315 / 2e-106 AT1G29670 336 / 3e-114 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.018G008100 [exp] 308 / 1e-103 AT1G29670 345 / 8e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076400 [exp] 307 / 5e-103 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.012G060700 [exp] 301 / 3e-101 AT1G29660 306 / 5e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10029280 pacid=23139816 polypeptide=Lus10029280 locus=Lus10029280.g ID=Lus10029280.BGIv1.0 annot-version=v1.0 ATGGGAAGGTTTTCAAATTCTAAGTCTTTGTTGATCATCGTTGTTCTTGTAATGTTGGGAGCTACCGCCGCCGAGGAATCATCACGGCGGCTGCCGGAAG TGCCATGCTACTTCATATTCGGAGACTCGCTATTCGACAACGGCAATAACAACAACCTCCAAACGCCGTCGAAGGTCAATTACCCTCCTTACGGTGTTGA CTTTCCCACCGGCCCGACCGGACGGTACTCCGATGGACGAACTACGGCCGATATAGTTGGTGAACTCTTGGGTTTTGATAACTTCATCCCATCTTTCGCA TCCAATCCTAACCGATCGGAGTTACTCGTCGGAGTAAATTATGCATCTGGAGGGGCTGGGATTCTGATCGAAACTGGAAAGCAAGTGGGTGACAATGTAG ACTTAAGCAAGCAATTGAAAAACCACGACATGACCGTTGAGAACTTAGTTGAAGTTTTAAGAAGTAAAGGATCAGCTCATCACCATTTGACGAAATGTTT GTACATATCGAATATGGGTAATAACGACTACCTCAACAACTATCTTCTTCCACAATCTTCGTCAATAAGGGAAAAGTACAACCCTGATCAATTCGCAGCA CTTCTCATCTCGAAATATTCTAACCAAATTAAGAGGATGTACAAGTTGGGAGCAAGGAAGGTAGGGTTGACTGGAGTCCTCCCCATAGGCTGCACCCCAA GTGCCATTGCAGCCTCTAATGACTCGGTTTGTGACGACTCATTGAATCAACTAGTGGAGCCGTTCAACATCCGACTCCAATTGCTTGTTGACCGGCTCAA TGTCGAATTCCGTGATGCGAAATTTGTGTACCTCGACTCGACATTGGCCACGAATCAAGCCCTCCAAGCTTTGGATGTCAAAACGGCGTCGTGTTGTCAA GCGAGTTCAGTGACTGGGAATTGCATTCCCAACTTGGTTCCATGCGCAGATAGACGGTCGTATGTGTTTTGGGACGCATTTCACCCGACTGAAGCTGCGA ACCGGATTGTCGCATCAGTTTACTATCGGGCTATTAAGCGGATATTGTAA
AA sequence Show only first row Show all	>Lus10029280 pacid=23139816 polypeptide=Lus10029280 locus=Lus10029280.g ID=Lus10029280.BGIv1.0 annot-version=v1.0 MGRFSNSKSLLIIVVLVMLGATAAEESSRRLPEVPCYFIFGDSLFDNGNNNNLQTPSKVNYPPYGVDFPTGPTGRYSDGRTTADIVGELLGFDNFIPSFA SNPNRSELLVGVNYASGGAGILIETGKQVGDNVDLSKQLKNHDMTVENLVEVLRSKGSAHHHLTKCLYISNMGNNDYLNNYLLPQSSSIREKYNPDQFAA LLISKYSNQIKRMYKLGARKVGLTGVLPIGCTPSAIAASNDSVCDDSLNQLVEPFNIRLQLLVDRLNVEFRDAKFVYLDSTLATNQALQALDVKTASCCQ ASSVTGNCIPNLVPCADRRSYVFWDAFHPTEAANRIVASVYYRAIKRIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10029280 [exp]	0	1
AT2G30770		CYP71A13	cytochrome P450, family 71, su...		Lus10043310 [exp]	1.0	0.9733
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10029821 [exp]	3.3	0.9545
AT3G52520			unknown protein		Lus10004216 [exp]	5.0	0.9322
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10009824 [exp]	5.7	0.9259
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10029872 [exp]	6.3	0.9660
					Lus10015828 [exp]	6.7	0.9652
AT5G15430			Plant calmodulin-binding prote...		Lus10000141 [exp]	8.9	0.9624
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10028145 [exp]	10.0	0.9622
AT5G15430			Plant calmodulin-binding prote...		Lus10003472 [exp]	11.0	0.9616
AT1G03940			HXXXD-type acyl-transferase fa...		Lus10012743 [exp]	12.0	0.9390

Compare expression of checked genes

Lus10029280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.