Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42110 69 / 2e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016261 [exp] 174 / 1e-56 AT2G42110 83 / 9e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G045700 [exp] 73 / 5e-17 AT2G42110 100 / 7e-28 unknown protein Potri.006G192500 [exp] 65 / 5e-14 AT2G42110 74 / 1e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029282 pacid=23139966 polypeptide=Lus10029282 locus=Lus10029282.g ID=Lus10029282.BGIv1.0 annot-version=v1.0 ATGGACGCAAAGCTCGACCCCGCCTCCTCTCCACCACCCGCTGCCGCAGTTCAGCGGGTCAACAAGAGATTCTCCGACGAGCTGCTCCGCAAGTTCGCGG ATTCCGGCGACGAGGAGGAAAAGGCGGCGGCAGAGCGTGCGTGGAAACGACGGCGAAGCAGCTCCAGGAAGAAGAATACAGTGAGGAGTGTAGAAGACGA AGATGAAAGATACGAATTGGCGGTGTCAGCAGAGAGGCGATCGCTGCTCGCTGTATCGACGACGAGGAAGAAGTGGGCAGTGCTCCGCCGCGGCGGCAGA GGACGTGGCTGTAGTAACAAGTCCGTTCTCGTGTCCGTCATTGAAAAGACGTGGAGGAGGACGTTAGAAGGGGCGTCGAGGATGATACTGGAGAAGCAGC GTTGCAATCGCCACAGGCGTTTCATTAACGATGTTCTTGTCTATTAA
AA sequence Show only first row Show all	>Lus10029282 pacid=23139966 polypeptide=Lus10029282 locus=Lus10029282.g ID=Lus10029282.BGIv1.0 annot-version=v1.0 MDAKLDPASSPPPAAAVQRVNKRFSDELLRKFADSGDEEEKAAAERAWKRRRSSSRKKNTVRSVEDEDERYELAVSAERRSLLAVSTTRKKWAVLRRGGR GRGCSNKSVLVSVIEKTWRRTLEGASRMILEKQRCNRHRRFINDVLVY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42110			unknown protein		Lus10029282 [exp]	0	1
AT2G42110			unknown protein		Lus10016261 [exp]	1.4	0.9371
AT3G56130			biotin/lipoyl attachment domai...		Lus10017424 [exp]	4.6	0.9037
AT5G12360			unknown protein		Lus10039048 [exp]	8.8	0.9346
					Lus10035795 [exp]	9.2	0.9110
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10001909 [exp]	10.5	0.9231
AT1G06660		JASON	JASON, unknown protein		Lus10020732 [exp]	13.0	0.9256
AT5G07670			RNI-like superfamily protein (...		Lus10027218 [exp]	16.3	0.9189
					Lus10001684 [exp]	16.9	0.9234
AT5G04320			Shugoshin C terminus (.1.2)		Lus10021420 [exp]	17.1	0.9198
AT3G51290			Protein of unknown function (D...		Lus10028431 [exp]	20.6	0.9177

Compare expression of checked genes

Lus10029282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.