Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12120 244 / 3e-81 FAD2 fatty acid desaturase 2 (.1.2) AT2G29980 106 / 2e-28 AtFAD3, FAD3 fatty acid desaturase 3 (.1.2) AT5G05580 104 / 5e-27 AtFAD8, SH1, FAD8 fatty acid desaturase 8 (.1.2) AT3G11170 103 / 1e-26 AtFAD7, FADD, FAD7 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) AT4G30950 64 / 1e-12 FADC, SFD4, FAD6 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012008 [exp] 301 / 6e-107 AT3G12120 248 / 1e-82 fatty acid desaturase 2 (.1.2) Lus10004175 [exp] 280 / 3e-95 AT3G12120 635 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021051 [exp] 280 / 5e-95 AT3G12120 634 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021045 [exp] 218 / 1e-70 AT3G12120 500 / 2e-178 fatty acid desaturase 2 (.1.2) Lus10004176 [exp] 217 / 2e-70 AT3G12120 519 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021050 [exp] 215 / 1e-69 AT3G12120 521 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004178 [exp] 213 / 7e-69 AT3G12120 532 / 0.0 fatty acid desaturase 2 (.1.2) Lus10004177 [exp] 212 / 2e-68 AT3G12120 508 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021047 [exp] 211 / 3e-68 AT3G12120 502 / 9e-179 fatty acid desaturase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G192000 [exp] 253 / 2e-84 AT3G12120 629 / 0.0 fatty acid desaturase 2 (.1.2) Potri.016G046200 [exp] 248 / 2e-82 AT3G12120 624 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012500 [exp] 217 / 4e-71 AT3G12120 480 / 3e-171 fatty acid desaturase 2 (.1.2) Potri.001G012700 [exp] 213 / 9e-69 AT3G12120 553 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012401 [exp] 213 / 4e-68 AT3G12120 571 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G252900 [exp] 110 / 4e-29 AT2G29980 539 / 0.0 fatty acid desaturase 3 (.1.2) Potri.016G117500 [exp] 108 / 3e-28 AT5G05580 592 / 0.0 fatty acid desaturase 8 (.1.2) Potri.006G101500 [exp] 107 / 5e-28 AT5G05580 632 / 0.0 fatty acid desaturase 8 (.1.2) Potri.010G187800 [exp] 106 / 2e-27 AT5G05580 683 / 0.0 fatty acid desaturase 8 (.1.2) Potri.008G069600 [exp] 102 / 5e-26 AT5G05580 689 / 0.0 fatty acid desaturase 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase PF11960 [flax] [poplar] DUF3474 Domain of unknown function (DUF3474)
Representative CDS sequence Show only first row Show all	>Lus10029284 pacid=23139830 polypeptide=Lus10029284 locus=Lus10029284.g ID=Lus10029284.BGIv1.0 annot-version=v1.0 ATGGGTGCCGGTGGCAGAATGTCAGTGCCTCCATCATCCAAACCTATGAAGAGGTCTCCTTACTCAAAGCCACCATTCACGCTCGGTGAGCTCAAGAAGG CCATTCCTCCACACTGTTTCAAACGTTCAATCCCCCGATCGTTCGCCTACGTGGCGTACGACCTCACCATTGCAGCAATCTTCTACTACATCGCCACCAC TTACTTCCACCTCCTCCCTAGCCCTCTCAACTACCTCGCCTGGCCGGTCTACTGGGCCTGCCAGGGCTGCATCCTCACTGGAGTATGGGTGTTGGCTCAC GAATGCGGTCACCATGCCTTCAGCGACTACCAGTGGCTCGACGACATGGTTGGCTTCGTCCTCCATTCGTCCCTCCTTGTTCCTTACTTCTCCTGGAAGC ACAGCCACCGCCGCCACCATTCAAACACGGGGTCGCTTCAGCCACCGCCGCCACCATTCCAACACGGGATCGCTTGA
AA sequence Show only first row Show all	>Lus10029284 pacid=23139830 polypeptide=Lus10029284 locus=Lus10029284.g ID=Lus10029284.BGIv1.0 annot-version=v1.0 MGAGGRMSVPPSSKPMKRSPYSKPPFTLGELKKAIPPHCFKRSIPRSFAYVAYDLTIAAIFYYIATTYFHLLPSPLNYLAWPVYWACQGCILTGVWVLAH ECGHHAFSDYQWLDDMVGFVLHSSLLVPYFSWKHSHRRHHSNTGSLQPPPPPFQHGIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10029284 [exp]	0	1
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10012008 [exp]	1.0	0.8965
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Lus10027341 [exp]	4.7	0.8541
AT1G08470		SSL3	strictosidine synthase-like 3 ...		Lus10013370 [exp]	6.5	0.8134
AT4G23490			Protein of unknown function (D...		Lus10028769 [exp]	9.6	0.8314
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Lus10035831 [exp]	12.4	0.7927
AT1G71920		HISN6B	HISTIDINE BIOSYNTHESIS 6B (.1....		Lus10013699 [exp]	13.4	0.8193
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Lus10001921 [exp]	14.7	0.8197
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Lus10041329 [exp]	16.9	0.8126
AT3G59760		ATCS-C, OASC	ARABIDOPSIS THALIANA CYSTEINSY...		Lus10027056 [exp]	18.5	0.8106
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Lus10036843 [exp]	18.6	0.7925

Compare expression of checked genes

Lus10029284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.