Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42080 194 / 2e-61 Chaperone DnaJ-domain superfamily protein (.1) AT3G58020 137 / 2e-39 Chaperone DnaJ-domain superfamily protein (.1) AT2G18465 81 / 4e-18 Chaperone DnaJ-domain superfamily protein (.1) AT1G59725 49 / 2e-06 DNAJ heat shock family protein (.1) AT3G08910 45 / 2e-05 DNAJ heat shock family protein (.1) AT4G28480 45 / 2e-05 DNAJ heat shock family protein (.1.2) AT5G03160 45 / 3e-05 ATP58IPK homolog of mamallian P58IPK (.1) AT1G10350 45 / 3e-05 DNAJ heat shock family protein (.1) AT3G17830 45 / 4e-05 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G20560 44 / 4e-05 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016258 [exp] 466 / 8e-169 AT2G42080 213 / 5e-69 Chaperone DnaJ-domain superfamily protein (.1) Lus10020871 [exp] 105 / 3e-27 AT2G18465 115 / 1e-30 Chaperone DnaJ-domain superfamily protein (.1) Lus10033506 [exp] 95 / 5e-23 AT2G18465 103 / 3e-26 Chaperone DnaJ-domain superfamily protein (.1) Lus10013280 [exp] 49 / 1e-06 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1) Lus10017687 [exp] 46 / 1e-05 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10031908 [exp] 46 / 1e-05 AT3G17830 457 / 3e-157 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10031336 [exp] 46 / 1e-05 AT3G17830 459 / 5e-158 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10030803 [exp] 46 / 1e-05 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10013981 [exp] 45 / 2e-05 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G010000 [exp] 97 / 9e-24 AT2G18465 150 / 4e-44 Chaperone DnaJ-domain superfamily protein (.1) Potri.001G308900 [exp] 94 / 1e-22 AT2G18465 149 / 2e-43 Chaperone DnaJ-domain superfamily protein (.1) Potri.016G045401 [exp] 71 / 8e-15 AT2G42080 50 / 2e-07 Chaperone DnaJ-domain superfamily protein (.1) Potri.006G024700 [exp] 48 / 1e-06 AT2G41000 125 / 2e-36 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.011G057601 [exp] 48 / 3e-06 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 46 / 8e-06 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 46 / 8e-06 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.010G035000 [exp] 46 / 1e-05 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 45 / 2e-05 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 45 / 3e-05 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10029287 pacid=23139960 polypeptide=Lus10029287 locus=Lus10029287.g ID=Lus10029287.BGIv1.0 annot-version=v1.0 ATGAATTTGGCAGCTAAATCCGCCATTTACAACAATCTTAGCAGCAGAAATTTCCAGCTCCGTGCCGCCGCCCTGTTCCATTCTTCCCCCGTCCTCGAAC GCAAACGCCGCGGCAGCTCCTATTCCGGCTACTCCAGACCAAATTTTAGTTCGAGGGGGAACAGGAAGCTACACGGGAAGGACGACTTACTACGCAATCT TAGGGCTTATGCAGACACCTTATTTCAGGATTGGAAAGATGAACGTGAAGAGGAAGGTCCATCTTCAAATAAAGAACCTTCATGGTTTAGAAAGCAATAC TCCAAGGGACCCAAAAACACCAATGCTAGAAGCAGCCGCTGGAACAAAAGAGGCTTTGATTTCTGCGATGACGACATAGAAGTCGAGACCGTTTTCCGAT CCGCATTCGGTGGCAGTACCCGTCACTTCTACTGGTCCTTCATAAACGACGAGCAACCTCAGTGGAAGAGATCTTCATCTTGGAACTCGAGGAGGTTTAA ATTTCGAGAGGAGGACGATTATGAATCCGAATCTGATACTGGTGGTCCCATGGTAGGTTTGGTTTCGGAAAGGCGTACCCTCGGACTGCATCCTTCCTGT CCACTGAAGCTCGAAGATGTGAAATCCGCGTACCGGACATGCGCGATGAAATGGCACCCGGATCGTCACCTGGGTTCTTCCAAGCCGGTTGCAGAGGAGA AGTTCAAGGTCTGTAGTGCTGCGTATGAAACATTGTGTGCCAAATTGGCTGCTGCGGCTTAG
AA sequence Show only first row Show all	>Lus10029287 pacid=23139960 polypeptide=Lus10029287 locus=Lus10029287.g ID=Lus10029287.BGIv1.0 annot-version=v1.0 MNLAAKSAIYNNLSSRNFQLRAAALFHSSPVLERKRRGSSYSGYSRPNFSSRGNRKLHGKDDLLRNLRAYADTLFQDWKDEREEEGPSSNKEPSWFRKQY SKGPKNTNARSSRWNKRGFDFCDDDIEVETVFRSAFGGSTRHFYWSFINDEQPQWKRSSSWNSRRFKFREEDDYESESDTGGPMVGLVSERRTLGLHPSC PLKLEDVKSAYRTCAMKWHPDRHLGSSKPVAEEKFKVCSAAYETLCAKLAAAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42080			Chaperone DnaJ-domain superfam...		Lus10029287 [exp]	0	1
AT5G63090	AS2	LOBB, LOB	Lateral organ boundaries (LOB)...		Lus10039940 [exp]	4.0	0.6595
AT3G15880		WSIP2, TPR4	TOPLESS-RELATED 4, WUS-interac...		Lus10011905 [exp]	9.5	0.5760
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10008025 [exp]	33.1	0.5588
AT5G61370			Pentatricopeptide repeat (PPR)...		Lus10000207 [exp]	46.5	0.5289
AT3G25440		LOH1	LAG One Homologue 1, RNA-bindi...		Lus10009566 [exp]	55.0	0.5080
AT1G72740	MYB		Homeodomain-like/winged-helix ...		Lus10040111 [exp]	55.2	0.5395
AT3G07565			Protein of unknown function (D...		Lus10025581 [exp]	59.0	0.5001
AT5G61370			Pentatricopeptide repeat (PPR)...		Lus10021630 [exp]	80.5	0.5151
AT1G76280			Tetratricopeptide repeat (TPR)...		Lus10001597 [exp]	93.0	0.4984
					Lus10042671 [exp]	93.4	0.5129

Compare expression of checked genes

Lus10029287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.