Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07390 119 / 3e-30 AtRLP1 receptor like protein 1 (.1.2.3) AT1G74190 109 / 8e-27 AtRLP15 receptor like protein 15 (.1) AT1G74180 106 / 1e-25 AtRLP14 receptor like protein 14 (.1) AT5G49290 104 / 5e-25 ATRLP56 receptor like protein 56 (.1) AT1G58190 103 / 1e-24 AtRLP9 receptor like protein 9 (.1.2) AT1G74170 101 / 3e-24 AtRLP13 receptor like protein 13 (.1) AT3G53240 101 / 4e-24 AtRLP45 receptor like protein 45 (.1) AT2G25470 101 / 6e-24 AtRLP21 receptor like protein 21 (.1) AT2G32660 98 / 5e-23 AtRLP22 receptor like protein 22 (.1) AT1G54470 93 / 3e-21 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027856 [exp] 298 / 2e-94 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10042381 [exp] 282 / 3e-88 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10030068 [exp] 151 / 3e-41 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10027855 [exp] 135 / 2e-40 AT2G25470 81 / 4e-19 receptor like protein 21 (.1) Lus10002804 [exp] 124 / 5e-32 AT4G34880 257 / 2e-90 Amidase family protein (.1) Lus10002753 [exp] 100 / 2e-23 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 99 / 3e-23 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 99 / 3e-23 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 99 / 4e-23 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G144700 [exp] 158 / 1e-43 AT1G07390 362 / 5e-109 receptor like protein 1 (.1.2.3) Potri.001G065327 [exp] 157 / 1e-43 AT1G07390 352 / 3e-105 receptor like protein 1 (.1.2.3) Potri.003G041600 [exp] 157 / 2e-43 AT1G74170 333 / 2e-98 receptor like protein 13 (.1) Potri.018G124400 [exp] 155 / 7e-43 AT1G07390 342 / 1e-101 receptor like protein 1 (.1.2.3) Potri.018G144800 [exp] 155 / 8e-43 AT1G74170 284 / 1e-81 receptor like protein 13 (.1) Potri.001G064600 [exp] 155 / 1e-42 AT1G74180 347 / 5e-105 receptor like protein 14 (.1) Potri.001G065300 [exp] 154 / 2e-42 AT1G58190 390 / 4e-120 receptor like protein 9 (.1.2) Potri.018G145512 [exp] 153 / 5e-42 AT2G25470 338 / 5e-101 receptor like protein 21 (.1) Potri.001G065309 [exp] 151 / 5e-42 AT1G07390 294 / 6e-89 receptor like protein 1 (.1.2.3) Potri.018G148000 [exp] 152 / 8e-42 AT1G74190 354 / 1e-106 receptor like protein 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10029288 pacid=23139835 polypeptide=Lus10029288 locus=Lus10029288.g ID=Lus10029288.BGIv1.0 annot-version=v1.0 ATGGTGGGCTGTTTCGAGAATGAAGCCTTACCATCGACTGGAGATAAAGGAGTATACCCCATTGGAGACTATAAGTTGCAGGTTTTGGATCTCAACCATA ATCGTTTCGGTGGTGCTATACTGAAATGGATCGTTCGCTTGCCTCGGTTGAGTAATCTCTTGCTGAACAATAATGGGTTTTCAGGTGAAGTAGTGATGGC CTCTTGTTTTGAGCGATTCAAGATGTTTGATGTTTCTCACAACCATCTTTCTGGTACTCTTGACTCTGCATCCACATCTGCTAACAACTGTAGCTATGGA ATCGTTGATATGAAACCTACGAATCCTATGGATTTCATCACCAAGATGCATGTTTACACTTATCGTGGCAGACCACTTCAATTCATGCGTGGGATGGATT TCTCAAGCAACGAGTTCACTGGAGAGATTCCTTCTCAAATTGGTCTCAAGCTCACGTATATTAAAGTGCTCAATTTATCCTATAACAAGCTTGTAGGTCA AATTCCATGGACGTTTTCAAACCTACACGATATCGAAAGTTTGGATCTTTCTTACAACAATTTAAGCGGAAGGATTCCCCCTCAACTCACTGAGCTTACC TCTTTTGGAGTGTTCGACGTAGCATACAATAATTTGTCCAGAAAGTATCCTAAAATGACTGCACAGTTCGATTATTACGATGATGATGAAGATGATGGGT TTATTGACATTGAGGCGTTCTATGCTAGCGGGGGAGTGACTTGTGTTATGACAATGTTGATTATTGCTGGTGTTCTGTTTCTGTATATTAATTCTCATTG A
AA sequence Show only first row Show all	>Lus10029288 pacid=23139835 polypeptide=Lus10029288 locus=Lus10029288.g ID=Lus10029288.BGIv1.0 annot-version=v1.0 MVGCFENEALPSTGDKGVYPIGDYKLQVLDLNHNRFGGAILKWIVRLPRLSNLLLNNNGFSGEVVMASCFERFKMFDVSHNHLSGTLDSASTSANNCSYG IVDMKPTNPMDFITKMHVYTYRGRPLQFMRGMDFSSNEFTGEIPSQIGLKLTYIKVLNLSYNKLVGQIPWTFSNLHDIESLDLSYNNLSGRIPPQLTELT SFGVFDVAYNNLSRKYPKMTAQFDYYDDDEDDGFIDIEAFYASGGVTCVMTMLIIAGVLFLYINSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Lus10029288 [exp]	0	1

Compare expression of checked genes

Lus10029288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.