Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42070 342 / 8e-119 ATNUDX23, ATNUDT23 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23, nudix hydrolase homolog 23 (.1) AT5G20070 47 / 6e-06 ATNUDX19, ATNUDT19 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, nudix hydrolase homolog 19 (.1) AT1G68760 42 / 0.0001 ATNUDX1, ATNUDT1 NUDIX HYDROLASE 1, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 1, nudix hydrolase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016257 [exp] 56 / 2e-08 AT5G06740 638 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014493 [exp] 47 / 1e-05 AT5G20070 590 / 0.0 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, nudix hydrolase homolog 19 (.1) Lus10030056 [exp] 46 / 2e-05 AT5G20070 594 / 0.0 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, nudix hydrolase homolog 19 (.1) Lus10012319 [exp] 42 / 0.0004 AT5G47650 310 / 4e-106 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G192800 [exp] 387 / 1e-136 AT2G42070 351 / 3e-122 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23, nudix hydrolase homolog 23 (.1) Potri.016G045300 [exp] 373 / 4e-131 AT2G42070 353 / 3e-123 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23, nudix hydrolase homolog 23 (.1) Potri.006G154200 [exp] 48 / 3e-06 AT5G20070 590 / 0.0 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, nudix hydrolase homolog 19 (.1) Potri.018G070400 [exp] 47 / 8e-06 AT5G20070 609 / 0.0 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19, nudix hydrolase homolog 19 (.1) Potri.001G127700 [exp] 44 / 8e-05 AT5G47650 323 / 1e-111 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G368000 [exp] 42 / 0.0002 AT5G47650 342 / 6e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10029289 pacid=23139889 polypeptide=Lus10029289 locus=Lus10029289.g ID=Lus10029289.BGIv1.0 annot-version=v1.0 ATGCTAAAGGCTATTCAGGTACTGACCTCGTCGTCGAGATTCGTCGGGTTTTTTCGATGGAAACCACTAAGTTCTAGTGGCGCCGCCACCATCTCCGTTT CCTCTTCCGTTAATCCGTTATCCCACTCGTCGAATCCCCGGGGGAGTTCTTTTGAACCGGTTCGTGTCTACTCAACCGAGTCGGATCCTAGAATGGAGTC TGCTACGACGTCCTCTTCTGCTGCTGCTTTCCCGGCTGGGAGTGGTAGGAAGATCAATTTCTGCCAGTGGTGTGGAGGTGCGACGAAGCACGAGGTGCCG GATGGAGAGGAGAAGACGAGAGCTATATGCACACTCTGCGGCAGGATTGCTTACCAAAACCCCAAAATGGTCGTCGGATGCCTCATCGAGCATGATAACA AAGTTCTACTTTGCAAGCGAAACATCCATCCGTCATTTGGTCTTTGGACCCTTCCTGCTGGATATTTGGAAATTGGAGAGTCAGCAATGGAAGGTGCAGC GAGGGAAACCTGGGAGGAAGCTAATGCAGAGGTGGAAGTGGTTTCCCCATTTGCACAACTCGACATTCCCCTTATTGGTCAAACCTACATAATATTCTTG GCAAAGCTTAAGAAGCCCCTATTTTTCCCAGGACCAGAATCGTCAGATTGCCAACTATTCTCAATTGATGATATACCCTTTGAGTCTTTGGCCTTTTCGT CTATGGTGGTCACTCTGAAATTGTACATTGAAGATCTCAAATCTGGAAGGCAAAAGTTTCACTACGGCACCATTAACAAGAGGCCCGGCACAAGCCCTTC GGATAGTCATGCCTACACACTGGACAATCATATGCAGTCCTGA
AA sequence Show only first row Show all	>Lus10029289 pacid=23139889 polypeptide=Lus10029289 locus=Lus10029289.g ID=Lus10029289.BGIv1.0 annot-version=v1.0 MLKAIQVLTSSSRFVGFFRWKPLSSSGAATISVSSSVNPLSHSSNPRGSSFEPVRVYSTESDPRMESATTSSSAAAFPAGSGRKINFCQWCGGATKHEVP DGEEKTRAICTLCGRIAYQNPKMVVGCLIEHDNKVLLCKRNIHPSFGLWTLPAGYLEIGESAMEGAARETWEEANAEVEVVSPFAQLDIPLIGQTYIIFL AKLKKPLFFPGPESSDCQLFSIDDIPFESLAFSSMVVTLKLYIEDLKSGRQKFHYGTINKRPGTSPSDSHAYTLDNHMQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42070		ATNUDX23, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10029289 [exp]	0	1
AT4G33480			unknown protein		Lus10003851 [exp]	1.0	0.8690
AT1G31800		CYP97A3, LUT5	LUTEIN DEFICIENT 5, "cytochrom...		Lus10020380 [exp]	4.5	0.7360
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10033962 [exp]	10.4	0.7283
AT2G30990			Protein of unknown function (D...		Lus10020709 [exp]	10.8	0.6689
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10002880 [exp]	17.4	0.7083
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10009288 [exp]	19.9	0.6795
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10023476 [exp]	20.3	0.6907
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10029403 [exp]	28.3	0.6752
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10014836 [exp]	31.9	0.6733
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Lus10039241 [exp]	32.0	0.6878

Compare expression of checked genes

Lus10029289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.