Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06740 209 / 7e-62 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 92 / 3e-20 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 89 / 2e-19 Concanavalin A-like lectin protein kinase family protein (.1) AT3G59700 82 / 7e-17 LECRK1, ATHLECRK LECTIN-RECEPTOR KINASE 1, lectin-receptor kinase (.1) AT4G29050 82 / 1e-16 Concanavalin A-like lectin protein kinase family protein (.1) AT3G59740 81 / 1e-16 Concanavalin A-like lectin protein kinase family protein (.1) AT4G04960 76 / 9e-15 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 76 / 1e-14 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 76 / 1e-14 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 75 / 2e-14 RLK receptor lectin kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016257 [exp] 538 / 0 AT5G06740 638 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004166 [exp] 256 / 8e-80 AT5G06740 682 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10021060 [exp] 233 / 3e-71 AT5G06740 667 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10036986 [exp] 201 / 1e-59 AT5G06740 456 / 8e-155 Concanavalin A-like lectin protein kinase family protein (.1) Lus10009423 [exp] 105 / 1e-24 AT5G06740 446 / 2e-147 Concanavalin A-like lectin protein kinase family protein (.1) Lus10028699 [exp] 103 / 5e-24 AT5G06740 455 / 1e-151 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 101 / 3e-23 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10010867 [exp] 97 / 6e-22 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 94 / 8e-21 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G045000 [exp] 245 / 1e-75 AT5G06740 702 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G193000 [exp] 225 / 6e-68 AT5G06740 688 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G146500 [exp] 110 / 2e-26 AT5G06740 411 / 5e-135 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G101000 [exp] 99 / 1e-22 AT3G55550 704 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.008G058400 [exp] 95 / 4e-21 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 92 / 3e-20 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.010G200600 [exp] 91 / 8e-20 AT3G55550 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004500 [exp] 91 / 1e-19 AT5G10530 725 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.018G028800 [exp] 89 / 4e-19 AT5G06740 371 / 1e-119 Concanavalin A-like lectin protein kinase family protein (.1) Potri.004G209300 [exp] 87 / 1e-18 AT5G06740 368 / 3e-118 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10029290 pacid=23139986 polypeptide=Lus10029290 locus=Lus10029290.g ID=Lus10029290.BGIv1.0 annot-version=v1.0 ATGATGCAGCAAGCTAACCCGCCATTGAAGCTTGCAGCTTCTAAATCCATCGCAATCATCGTCGTCTTCTTCTTCTTCTTCATTACAGCTTGTTCTCCAG TTAGTTGCCTTCACTTCAACTACACAAACTTCCCCGACAACTTGACCAACGATTTCATTCGAACCAATGCCTACATAACCGCCAACACGATCCAGATCAC CCCGGATTTCCTGACGAACCAGTCCAGCCGAATCTTCCACAACGATTGCTTCCGGCTCTACAACTCCGGTGGTGTCGGTAGAGCGTCATTCAACGCGAAA TTCACCCTCCAAATCAACCCAAAAACTCGACCTTCAGAGGAAGGCTTGGCCTTCATCCTGACCGGAAACACGGCCCTGCCAGTCAACAGCTCAGGTCAGT GGCTCGGGATTGCTAACTCGATCGCCATCCGATTTTCTACCAGAATCGTAGGTGTGGAATTCGGCACCAGGAAGAGTTACCCGGATGACTTGGACGACAA CCATGTCTGGTTGGACATCAACGATGTTTACTCAATATGTCAGGAATCCCTGTCAGCTTTCAGGATCAATCTCTCTTCCTCCGATGTTGTCACAGCTGGA ATTCGGTATGATGGCTACACTTTGATGGTTTTCCTCGGTACGGAGCTGGAATGGCCCGTGCTTTCTCATCAGATCGACCTCTCGGATAATCTTCCTGAAG TTGTTCATGTGGGATTTTCGGGATCCACTAGTCAATTCGCTCAGCAGAACTTCATGGGTTTGATCGTTGGGGGGTTCGGGTTCGAATTCATCTACCGGAG AAGGAAACTAGCTAGGGAGAAACATAGAGTGGAAGATGAAGATGATGACTACGAAGATGCTCATCCGAGTATTGAAGAGGCGATTCGAGGGTCTTCCATG GCTCCGAAGAAGTTCAAACTCGACGAGCTTAGGGATGCAGCCGAGGATTTCGATTCGAAAAACATGCTTGGGAAAGGGGGATTCTGGACCGTGTACAAAG GGATTCTCCAAAACGGGGAGGTTGTCGCGGTGAAGAAAGTCTCCGAGGTGACAAGTCAAGGGAAGTAA
AA sequence Show only first row Show all	>Lus10029290 pacid=23139986 polypeptide=Lus10029290 locus=Lus10029290.g ID=Lus10029290.BGIv1.0 annot-version=v1.0 MMQQANPPLKLAASKSIAIIVVFFFFFITACSPVSCLHFNYTNFPDNLTNDFIRTNAYITANTIQITPDFLTNQSSRIFHNDCFRLYNSGGVGRASFNAK FTLQINPKTRPSEEGLAFILTGNTALPVNSSGQWLGIANSIAIRFSTRIVGVEFGTRKSYPDDLDDNHVWLDINDVYSICQESLSAFRINLSSSDVVTAG IRYDGYTLMVFLGTELEWPVLSHQIDLSDNLPEVVHVGFSGSTSQFAQQNFMGLIVGGFGFEFIYRRRKLAREKHRVEDEDDDYEDAHPSIEEAIRGSSM APKKFKLDELRDAAEDFDSKNMLGKGGFWTVYKGILQNGEVVAVKKVSEVTSQGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06740			Concanavalin A-like lectin pro...		Lus10029290 [exp]	0	1
AT5G55150			Protein of unknown function (D...		Lus10008665 [exp]	14.4	0.4779
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10003551 [exp]	15.6	0.5993
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10040101 [exp]	18.7	0.5976
					Lus10025786 [exp]	34.0	0.5435
AT5G49350			Glycine-rich protein family (....		Lus10034447 [exp]	37.5	0.5692
AT2G16910	bHLH	AMS, bHLH021	ABORTED MICROSPORES, basic hel...		Lus10042395 [exp]	44.4	0.5518
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10031061 [exp]	45.0	0.5803
AT1G45063			copper ion binding;electron ca...		Lus10020276 [exp]	48.6	0.5206
AT1G06340			Plant Tudor-like protein (.1)		Lus10039027 [exp]	71.6	0.4771
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10018718 [exp]	71.9	0.4771

Compare expression of checked genes

Lus10029290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.