Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58030 299 / 1e-97 RING/U-box superfamily protein (.1.2.3.4) AT2G42030 236 / 2e-73 RING/U-box superfamily protein (.1) AT2G44410 122 / 7e-31 RING/U-box superfamily protein (.1) AT2G23780 116 / 6e-30 RING/U-box superfamily protein (.1) AT1G19310 115 / 1e-29 RING/U-box superfamily protein (.1) AT1G74990 105 / 4e-27 RING/U-box superfamily protein (.1) AT4G27470 103 / 4e-25 ATRMA3 RING membrane-anchor 3 (.1) AT4G28270 92 / 2e-21 ATRMA2 RING membrane-anchor 2 (.1) AT4G03510 91 / 2e-20 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT3G07200 49 / 1e-06 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016255 [exp] 715 / 0 AT3G58030 362 / 2e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10021063 [exp] 464 / 2e-162 AT3G58030 362 / 1e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10004162 [exp] 454 / 1e-158 AT3G58030 367 / 3e-124 RING/U-box superfamily protein (.1.2.3.4) Lus10016303 [exp] 121 / 9e-32 AT1G19310 268 / 2e-91 RING/U-box superfamily protein (.1) Lus10010791 [exp] 119 / 3e-31 AT1G19310 266 / 1e-90 RING/U-box superfamily protein (.1) Lus10016796 [exp] 110 / 6e-28 AT2G23780 242 / 3e-81 RING/U-box superfamily protein (.1) Lus10022492 [exp] 110 / 7e-28 AT2G23780 241 / 1e-80 RING/U-box superfamily protein (.1) Lus10011184 [exp] 101 / 2e-24 AT4G03510 164 / 5e-50 RING membrane-anchor 1 (.1.2) Lus10018489 [exp] 101 / 3e-24 AT4G03510 159 / 7e-48 RING membrane-anchor 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G058300 [exp] 416 / 4e-143 AT3G58030 331 / 7e-110 RING/U-box superfamily protein (.1.2.3.4) Potri.006G193600 [exp] 398 / 4e-136 AT3G58030 389 / 2e-132 RING/U-box superfamily protein (.1.2.3.4) Potri.001G229600 [exp] 149 / 3e-40 AT2G44410 191 / 6e-56 RING/U-box superfamily protein (.1) Potri.009G023300 [exp] 148 / 1e-39 AT2G44410 192 / 3e-56 RING/U-box superfamily protein (.1) Potri.007G031600 [exp] 121 / 7e-32 AT2G23780 227 / 4e-75 RING/U-box superfamily protein (.1) Potri.005G127900 [exp] 121 / 8e-32 AT2G23780 234 / 3e-78 RING/U-box superfamily protein (.1) Potri.002G133000 [exp] 118 / 8e-31 AT1G19310 244 / 5e-82 RING/U-box superfamily protein (.1) Potri.014G040400 [exp] 117 / 3e-30 AT1G19310 226 / 4e-75 RING/U-box superfamily protein (.1) Potri.004G042700 [exp] 97 / 4e-23 AT4G03510 157 / 1e-47 RING membrane-anchor 1 (.1.2) Potri.013G132300 [exp] 98 / 6e-23 AT4G03510 191 / 2e-60 RING membrane-anchor 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10029292 pacid=23139951 polypeptide=Lus10029292 locus=Lus10029292.g ID=Lus10029292.BGIv1.0 annot-version=v1.0 ATGGGGGAGGAAGCACCTGATGCAATGAACCTCGACTTGAATCTTGGTCCTGGTCCTGACTCGGAAGCAGCTTCTTTACCTAGTGAAGGTGTGAACTTGG TCGATTGGATTACCGATGAACCGATGAATGAGGACCCGATCGAAAGAATAAGAGAAGGTTTAAGAATTCGAGCTAGGCAGCGATGGAGGTGGCGACAAGT CCAGTTTCCGCACGAGAGGCAAACCCAGCTTTCGGTGGAGTTAAATCAGTTGATCGGCGATCCTGGCACTCTTGGGGGTTTACAGGCTGGTGAAGGTAGT GTAGCAGCGGACGCACGGACGAATGAAGAGACTAAAATGTGCGAGAATGGTAATGGATTTCTAGAAGATGAAGTATTGGAGAAGAAGGATGATGTCGAGA AAGGGAATGCCACTGATGGGGGGAGTTTCTTCGATTGTAATATTTGCTTTGATTTGGCTTCGGATCCGGTTGTTACCTGTTGCGGCCATCTCTTCTGCTG GGCGTGCCTATATAGATGGTTACACATCCACTCTGATGCAAAAGAATGCCCCGTGTGCAAAGGAGAGGTCACCATCAAGAATGTTACTCCGATATACGGA CGTGGAAATAAGAATTTACGTCCACCTGAAGAGGACGAGGCTCTCGATATCCCGAGCAGGCCTCAGGGAAGGCGAGTCGAGAGTCTGAGGCAGACTCTTC AGAGGAATCAGTTTAACTTTCCGATGGAAGAGGTGATTCGACGCCTCGGAAGTAGGCTCGAGTTAATGCAAGAGTTGGCTCCGTCGTCTCAAGAACCGAG TGCTGGTCGTGCCGCTGCGGATAGGGATTCGTTTCTTAATAGGATAATGACACTTAGGGGATTGCGTGCCGAGCAGAGTTCAGTTCCAAATCCTAACGAG ATAGTGGACTTGACACAAAGCGGAACGAGCAGTCCAGAGGGAGGGAGAGCCCGCCGGATTCATTCTTCTTTGTTGCTCCGGAGGTCCCAAGCACATACTC ATAGCCATAGGCCTTCAGCTCACACTATGCTTTCAACGGTGTTGACTAATTCAGATAGAATGGTTGACCTTCTCTTGAACAATACAATGACAAGGAATCA GGACCAAGCTGTCGACGACAGGGATTCTTTCTCCAGCATTGCTGCAGTTATAAACTCGGAGAGTCAAATGGATACTGCAGTAGAAATCAATTCCATGGTC TCTCTTTCGACGTCCTCTTCTAGGAGAAGAAACGATAGCTCGAGAGCCTCTGATGTTGACAGCGGGGATTCTCGAGCTCCTAGGAGAAGGAGGCTAAATT AA
AA sequence Show only first row Show all	>Lus10029292 pacid=23139951 polypeptide=Lus10029292 locus=Lus10029292.g ID=Lus10029292.BGIv1.0 annot-version=v1.0 MGEEAPDAMNLDLNLGPGPDSEAASLPSEGVNLVDWITDEPMNEDPIERIREGLRIRARQRWRWRQVQFPHERQTQLSVELNQLIGDPGTLGGLQAGEGS VAADARTNEETKMCENGNGFLEDEVLEKKDDVEKGNATDGGSFFDCNICFDLASDPVVTCCGHLFCWACLYRWLHIHSDAKECPVCKGEVTIKNVTPIYG RGNKNLRPPEEDEALDIPSRPQGRRVESLRQTLQRNQFNFPMEEVIRRLGSRLELMQELAPSSQEPSAGRAAADRDSFLNRIMTLRGLRAEQSSVPNPNE IVDLTQSGTSSPEGGRARRIHSSLLLRRSQAHTHSHRPSAHTMLSTVLTNSDRMVDLLLNNTMTRNQDQAVDDRDSFSSIAAVINSESQMDTAVEINSMV SLSTSSSRRRNDSSRASDVDSGDSRAPRRRRLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58030			RING/U-box superfamily protein...		Lus10029292 [exp]	0	1
AT5G19860			Protein of unknown function, D...		Lus10039187 [exp]	6.7	0.7772
AT1G01820		PEX11C	peroxin 11c (.1)		Lus10041368 [exp]	7.8	0.8212
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10020254 [exp]	12.3	0.7431
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10012258 [exp]	14.1	0.7885
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10030481 [exp]	16.1	0.7759
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10039821 [exp]	24.7	0.7862
AT3G09085			Protein of unknown function (D...		Lus10017182 [exp]	29.1	0.7662
AT5G14740		BETACA2, CA18, ...	CARBONIC ANHYDRASE 18, BETA CA...		Lus10030874 [exp]	29.5	0.7297
AT3G32930			unknown protein		Lus10039189 [exp]	35.0	0.7573
AT1G29800			RING/FYVE/PHD-type zinc finger...		Lus10007320 [exp]	44.2	0.7706

Compare expression of checked genes

Lus10029292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.