Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06710 244 / 3e-78 HD HAT14 homeobox from Arabidopsis thaliana (.1.2) AT4G37790 206 / 4e-64 HD HAT22 Homeobox-leucine zipper protein family (.1) AT4G16780 201 / 2e-62 HD ATHB2, HAT4, ATHB-2 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) AT3G60390 202 / 3e-62 HD HAT3 homeobox-leucine zipper protein 3 (.1) AT2G22800 199 / 1e-61 HD HAT9 Homeobox-leucine zipper protein family (.1) AT5G47370 197 / 7e-61 HD HAT2 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT2G44910 195 / 2e-59 HD ATHB4, ATHB-4 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, homeobox-leucine zipper protein 4 (.1) AT4G17460 187 / 8e-57 HD HAT1 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT2G01430 152 / 2e-43 HD ATHB17, ATHB-17 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17, homeobox-leucine zipper protein 17 (.1) AT1G70920 141 / 2e-40 HD ATHB18 homeobox-leucine zipper protein 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016254 [exp] 485 / 2e-172 AT5G06710 274 / 4e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10004161 [exp] 348 / 6e-119 AT5G06710 263 / 5e-86 homeobox from Arabidopsis thaliana (.1.2) Lus10021064 [exp] 310 / 4e-105 AT5G06710 265 / 3e-88 homeobox from Arabidopsis thaliana (.1.2) Lus10007849 [exp] 211 / 1e-65 AT4G16780 303 / 6e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10004759 [exp] 210 / 4e-65 AT4G16780 305 / 1e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10004377 [exp] 206 / 9e-64 AT4G16780 265 / 1e-87 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10040175 [exp] 206 / 1e-63 AT4G16780 280 / 1e-93 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10019256 [exp] 152 / 4e-44 AT4G37790 162 / 3e-49 Homeobox-leucine zipper protein family (.1) Lus10011569 [exp] 151 / 1e-43 AT4G37790 162 / 3e-49 Homeobox-leucine zipper protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G059000 [exp] 321 / 2e-108 AT5G06710 241 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.006G193700 [exp] 308 / 2e-103 AT5G06710 251 / 1e-81 homeobox from Arabidopsis thaliana (.1.2) Potri.001G229700 [exp] 262 / 8e-85 AT5G06710 269 / 4e-88 homeobox from Arabidopsis thaliana (.1.2) Potri.009G023600 [exp] 260 / 5e-84 AT5G06710 243 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.016G058600 [exp] 241 / 5e-79 AT5G06710 239 / 9e-79 homeobox from Arabidopsis thaliana (.1.2) Potri.001G155100 [exp] 216 / 5e-68 AT4G16780 335 / 6e-116 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Potri.003G079800 [exp] 213 / 2e-66 AT4G16780 320 / 8e-110 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Potri.007G008200 [exp] 207 / 6e-65 AT4G37790 299 / 3e-102 Homeobox-leucine zipper protein family (.1) Potri.014G045100 [exp] 208 / 7e-65 AT3G60390 263 / 5e-87 homeobox-leucine zipper protein 3 (.1) Potri.005G147100 [exp] 207 / 8e-65 AT4G37790 270 / 1e-90 Homeobox-leucine zipper protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02183 [flax] [poplar] HALZ Homeobox associated leucine zipper CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10029293 pacid=23139882 polypeptide=Lus10029293 locus=Lus10029293.g ID=Lus10029293.BGIv1.0 annot-version=v1.0 ATGGAGCTTGCTCTGAGCTTAGGCGACGCGTCAAAGTCATTCAAGTTCCTCGACAAAGCCCAACCCAGCAAGCTCCCCACCAACGATCACCACCTCGGGT TTTGCATGGCCTTTTCCGGAGCCGGCGTCGGAGCAGCTGGTGGTACTGCTTCTTCAATGGAGAGATCGCAAGAGATTATCCACGACGCTAGAAGAGTCAT CAATGTTCCCTCGACTGCAGATCCGCAGCCTTCTCTCCAGCTCGATCTCTCACCATTTTCCCCTGTTCCGAGAGGACCAACTCCGGCGACGGCGGCGCCG TCGCCTCTCCCGTTTCCATGGCTCGTCACTGATCCAGCTCAGAGGGAGAGTCAGAGCAGGAGGTTCGACGTGAACCGTTTGTCAGCGGAAGAAGGTGACG ACGCCGACGGAGCGTCTCTCTCGTCTCCCAATAGCGCTGCTACGTCGTCGTTTCGTATGGACTTCGGAATCGGCATTAATAGCAATGGTAAGAGAGATTT GGATCAGGAAGGTGAAAGAGCTGGTGGGAGTGAAGATGATGAGAATGGATTAGGGAGGAAAAAGCTCAGACTTTCCAAAGACCAATCTGCTTTTCTCGAA GAGAGCTTCAAAGAACACAACACCCTTAACCCAAAGCAAAAGCTTGAGCTGGCAAAGCAGTTGAATCTACGGCCGAGGCAGGTTGAAGTGTGGTTTCAGA ACAGGAGAGCAAGGACAAAGCTGAAGCAAACAGAGGTGGATTGCGAGTATCTAAAGAGGTGCTGTGAAACGCTGACAGAAGAGAACAGGAGGTTACAAAA GGAACTTCAGGAGTTAAGAGCTTTGAAGACTTCTCAGCCTTTCTATATGCAGCATCCTGCAACCACTCTCACTATGTGCCCTTCTTGCGAGCGCGTCGCA ACCACCACCACCACCACCACCTCCACGGCGGCGACATCATCCACCACTGCCGCTCCGGCAAGCACCACCACGGCCACCACCAACTCATCATCGACGACAT TGTCATTGGGTAATAATAGCTGTAACGGAAAGGTGGGAAAGGTGTATCCTTTCCCATCTGTTCAGCTTCAAATGTCTCAGCAGCATTCATCTCAACCCAC CAATCCGGCTGGTTCATGA
AA sequence Show only first row Show all	>Lus10029293 pacid=23139882 polypeptide=Lus10029293 locus=Lus10029293.g ID=Lus10029293.BGIv1.0 annot-version=v1.0 MELALSLGDASKSFKFLDKAQPSKLPTNDHHLGFCMAFSGAGVGAAGGTASSMERSQEIIHDARRVINVPSTADPQPSLQLDLSPFSPVPRGPTPATAAP SPLPFPWLVTDPAQRESQSRRFDVNRLSAEEGDDADGASLSSPNSAATSSFRMDFGIGINSNGKRDLDQEGERAGGSEDDENGLGRKKLRLSKDQSAFLE ESFKEHNTLNPKQKLELAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQHPATTLTMCPSCERVA TTTTTTTSTAATSSTTAAPASTTTATTNSSSTTLSLGNNSCNGKVGKVYPFPSVQLQMSQQHSSQPTNPAGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10029293 [exp]	0	1
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10019191 [exp]	2.0	0.8052
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Lus10011506 [exp]	2.2	0.8082
AT3G26750			unknown protein		Lus10021459 [exp]	4.9	0.7689
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10035056 [exp]	8.0	0.7269
AT1G31430			Pentatricopeptide repeat (PPR-...		Lus10002288 [exp]	22.4	0.7350
AT3G48530		KING1	SNF1-related protein kinase re...		Lus10016763 [exp]	22.4	0.7970
AT1G77210		AtSTP14	sugar transport protein 14, su...		Lus10009714 [exp]	30.8	0.7763
AT2G45620			Nucleotidyltransferase family ...		Lus10015854 [exp]	31.0	0.7613
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10005035 [exp]	37.0	0.6718
AT5G04040		SDP1	SUGAR-DEPENDENT1, Patatin-like...		Lus10027259 [exp]	38.1	0.7550

Compare expression of checked genes

Lus10029293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.