Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05055 327 / 5e-110 ATGTF2H2, GTF2H2 general transcription factor II H2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016248 [exp] 402 / 1e-139 AT1G05055 632 / 0.0 general transcription factor II H2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G113700 [exp] 345 / 2e-117 AT1G05055 609 / 0.0 general transcription factor II H2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0006 [flax] [poplar] C1 PF07975 [flax] [poplar] C1_4 TFIIH C1-like domain CL0128 [flax] [poplar] vWA-like PF04056 [flax] [poplar] Ssl1 Ssl1-like
Representative CDS sequence Show only first row Show all	>Lus10029294 pacid=23139800 polypeptide=Lus10029294 locus=Lus10029294.g ID=Lus10029294.BGIv1.0 annot-version=v1.0 ATGGACGGTGGGAAAAAACGGTTGAACGGCGAAGCAGAAGAAGAGGAGAACGAGGAAGACGTAGAGGATGAAGGCCGTGAGGCATGGGAGAAACAATACA CTGACGAGAGATCGTGGGAAGCCTTGGAAGAGGACGAGTCGGGACTACTTCATGTTGATAACACCGCCATCTATCACTCTCAGTATCGCCGACGCCTACG ATCACTTGCTTCCACTTCCGCGGCTTCCGGGATACAAAAGGGTCTCATTCGCTTCCTGTATCTCGTCGTTGATCTTTCCACGGCAGCTGGAGTGATGGAT TTCAAACCGAGTCGGATGGCTGTGATTGCCAAACACGTCGAGGCTTTCATCAGGGAGTTTTTCGACCAGAACCCTCTTAGTCAAATCGGTCTCGTGATTA TAAAAGACGGGGTTGCTCAATCTTTGACGGAGCTCGGTGGAAGTCTTGAGTCACATATTAAGGCCTTGATGGTCAAGTTAGGGTGCTCGGGAGATTCGTC ACTTCAGAATGCGCTAGAACTTGTACATGGCAATCTCCATAAAATTCCATCGTACGGTCATCGTGAAGCTCTCATAATGTATTCTGCTCTCTCGACCTGT GACCCGGGTGATATAATGGAGACTATCCAGAAATGCAAGAAGGCTAAGATTAGGTGCTCAGTTATTGGCCTCTCAGCTGAAATGTTTGTCTGCAAACATC TTTGCCAAGAAACTGGAGGGTCGTATATGGTCGCCCTGGATGAGTCCTATCATCATCTCTTCCCAGTCGAGCCATTCACTGAGGTTTCTGCACGTCAAAA TGAACTGAGCAGAATGTCTCAGAAGACTTGCTTCGGTTGTCGACAGAACCTTCTCAATCCTGGTAACAAAGCAGGGCCATGTGTGAGTTGCACAAAGTGC AAGCAGTATTTCTGCCTCGATTGCGACATTTATATCCACGAGAGCTTGCACAACTGCCCTGGCTGCGACAGCCGAGCAGTTACGAAAGCTGCTGCTGTTG TGTAG
AA sequence Show only first row Show all	>Lus10029294 pacid=23139800 polypeptide=Lus10029294 locus=Lus10029294.g ID=Lus10029294.BGIv1.0 annot-version=v1.0 MDGGKKRLNGEAEEEENEEDVEDEGREAWEKQYTDERSWEALEEDESGLLHVDNTAIYHSQYRRRLRSLASTSAASGIQKGLIRFLYLVVDLSTAAGVMD FKPSRMAVIAKHVEAFIREFFDQNPLSQIGLVIIKDGVAQSLTELGGSLESHIKALMVKLGCSGDSSLQNALELVHGNLHKIPSYGHREALIMYSALSTC DPGDIMETIQKCKKAKIRCSVIGLSAEMFVCKHLCQETGGSYMVALDESYHHLFPVEPFTEVSARQNELSRMSQKTCFGCRQNLLNPGNKAGPCVSCTKC KQYFCLDCDIYIHESLHNCPGCDSRAVTKAAAVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05055		ATGTF2H2, GTF2H...	general transcription factor I...		Lus10029294 [exp]	0	1
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10025653 [exp]	5.3	0.8525
AT1G36990			unknown protein		Lus10029655 [exp]	6.2	0.8957
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Lus10010577 [exp]	8.3	0.8802
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10015696 [exp]	12.4	0.8632
AT1G31840			Tetratricopeptide repeat (TPR)...		Lus10009465 [exp]	15.5	0.8494
AT1G24265			Protein of unknown function (D...		Lus10003127 [exp]	16.9	0.8400
AT5G39840			ATP-dependent RNA helicase, mi...		Lus10034867 [exp]	17.3	0.8398
AT3G51650			unknown protein		Lus10009098 [exp]	17.7	0.8616
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10016048 [exp]	18.2	0.8819
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10016726 [exp]	19.7	0.8559

Compare expression of checked genes

Lus10029294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.