Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41970 547 / 0 Protein kinase superfamily protein (.1) AT1G06700 469 / 2e-166 Protein kinase superfamily protein (.1.2) AT3G59350 467 / 1e-165 Protein kinase superfamily protein (.1.2.3) AT2G30740 464 / 3e-164 Protein kinase superfamily protein (.1) AT2G43230 464 / 1e-163 Protein kinase superfamily protein (.1.2) AT3G17410 443 / 4e-156 Protein kinase superfamily protein (.1) AT2G47060 442 / 9e-156 PTI1-4 Pto-interacting 1-4, Protein kinase superfamily protein (.1.2.3.4.5) AT3G62220 437 / 5e-154 Protein kinase superfamily protein (.1) AT2G30730 431 / 1e-151 Protein kinase superfamily protein (.1) AT1G48210 431 / 2e-151 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016247 [exp] 684 / 0 AT2G41970 563 / 0.0 Protein kinase superfamily protein (.1) Lus10017242 [exp] 630 / 0 AT2G41970 560 / 0.0 Protein kinase superfamily protein (.1) Lus10021070 [exp] 619 / 0 AT2G41970 562 / 0.0 Protein kinase superfamily protein (.1) Lus10025498 [exp] 474 / 2e-167 AT3G59350 630 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10026708 [exp] 473 / 2e-167 AT3G59350 625 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10025496 [exp] 472 / 2e-167 AT3G59350 610 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10026706 [exp] 472 / 2e-167 AT3G59350 613 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10038042 [exp] 466 / 2e-165 AT3G62220 588 / 0.0 Protein kinase superfamily protein (.1) Lus10009983 [exp] 462 / 7e-164 AT3G62220 586 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G194000 [exp] 575 / 0 AT2G41970 586 / 0.0 Protein kinase superfamily protein (.1) Potri.016G059600 [exp] 574 / 0 AT2G41970 600 / 0.0 Protein kinase superfamily protein (.1) Potri.017G036300 [exp] 479 / 9e-170 AT3G59350 632 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.007G124000 [exp] 472 / 2e-167 AT2G43230 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G188600 [exp] 456 / 4e-161 AT3G62220 595 / 0.0 Protein kinase superfamily protein (.1) Potri.014G114200 [exp] 447 / 1e-157 AT3G62220 577 / 0.0 Protein kinase superfamily protein (.1) Potri.010G001500 [exp] 410 / 4e-143 AT1G48210 494 / 3e-176 Protein kinase superfamily protein (.1.2) Potri.013G025700 [exp] 256 / 9e-82 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.014G194300 [exp] 263 / 3e-81 AT2G20300 966 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.002G254600 [exp] 263 / 4e-81 AT2G20300 947 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10029295 pacid=23139945 polypeptide=Lus10029295 locus=Lus10029295.g ID=Lus10029295.BGIv1.0 annot-version=v1.0 ATGTTGTGTTGTGGAGGAGCGGAGGAGGATCCTTACCCACCCGCGAGTCAATACACTGCCCAACCCAAAGGCAGTCCTTATGGAGCGCCTGATCTCAGAG CAGCGAATCCGCCAAGAGGAGTACCAACAAAAATGTTGCCGATTGAGACCCCTGCTATGTCGCTCGACGAGCTCAATCAATTGACCGACAACTTCGGCCA AAAGGCCCTAATCGGAGAAGGATCCTACGGCCGGGTCTTCTACGCCACATTGAGTGATGGCGTCCCCGCCGCAATCAAGAAGCTCGATACTAGCACGTCT CAAGAACCCGACACCGATTTTGCAGCCCAGCTATCAGTAGTTTCTAGATTGAAAAACGACCACTTCGTGGAGCTAATGGGTTACTGCCTTGAGGCAAACA ACCGAATCTTGGTTTATCAATATGCATCCATGGGTTCATTACACGATGTGTTACACGGAAGGAAAGGGGTGCAAGGGGCCGAGCCAGGACCGGCTCTGAA CTGGAGCCAGAGAGTGAAGATAGCCTTTGGAGCAGCAAAAGGGTTGGAGTATTTGCACGAGAAATGCCAGCCTCCTATCGTCCATAGGGATGTAAGGTCG AGCAATGTTCTTCTATTCGATGAGTTCACCTCCAAGATTGCCGATTTCAACATCTCTAGTGCCTCGTCCGATACCGCTGCCCGGTTGCATTCGACTCGTG TTTTGGGAACTTTCGGCTACCATGCTCCAGAGTACGCAATGACGGGACAAATAACTCAAAAGAGCGATGTATACAGTTTTGGAGTCGTTCTACTCGAACT CTTGACCGGTAGAAAGCCCGTGGATCACACAATGCCTAAAGGGCAACAAAGTCTCGTCACTTGGGCTACACCAAGATTGAGCGAAGACAAAGTGAAACAA TGTGTAGACCCAAAGCTAAACAATGAATACCCACCAAAGGCGGTTGCCAAGTTAGCAGCCGTTGCAGCACTATGTGTCCAGTACGAGGCAGATTTCAGGC CAAACATGACCATTGTTGTAAAGGCTCTTCAGCCATTGCTCAACGCTCGACCGGCCGCCGGCCCGGACCCTGCTGCTGCACATGGTTGA
AA sequence Show only first row Show all	>Lus10029295 pacid=23139945 polypeptide=Lus10029295 locus=Lus10029295.g ID=Lus10029295.BGIv1.0 annot-version=v1.0 MLCCGGAEEDPYPPASQYTAQPKGSPYGAPDLRAANPPRGVPTKMLPIETPAMSLDELNQLTDNFGQKALIGEGSYGRVFYATLSDGVPAAIKKLDTSTS QEPDTDFAAQLSVVSRLKNDHFVELMGYCLEANNRILVYQYASMGSLHDVLHGRKGVQGAEPGPALNWSQRVKIAFGAAKGLEYLHEKCQPPIVHRDVRS SNVLLFDEFTSKIADFNISSASSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQ CVDPKLNNEYPPKAVAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNARPAAGPDPAAAHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41970			Protein kinase superfamily pro...		Lus10029295 [exp]	0	1

Compare expression of checked genes

Lus10029295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.