Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06680 956 / 0 ATSPC98, SPC98, ATGCP3 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) AT5G17410 126 / 5e-30 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) AT3G53760 77 / 2e-14 ATGCP4 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) AT3G43610 55 / 2e-07 Spc97 / Spc98 family of spindle pole body (SBP) component (.1) AT1G37010 42 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016246 [exp] 1197 / 0 AT5G06680 1262 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Lus10026855 [exp] 88 / 9e-18 AT5G17410 805 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) Lus10029779 [exp] 78 / 1e-14 AT3G53760 1049 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Lus10020228 [exp] 67 / 6e-12 AT5G17410 382 / 3e-129 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) Lus10042807 [exp] 65 / 2e-10 AT3G53760 1013 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G194200 [exp] 1001 / 0 AT5G06680 1201 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Potri.016G059900 [exp] 997 / 0 AT5G06680 1301 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Potri.010G180700 [exp] 126 / 5e-30 AT5G17410 994 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) Potri.014G128400 [exp] 88 / 9e-18 AT3G53760 1076 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Potri.009G153300 [exp] 53 / 8e-07 AT3G43610 855 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0540 [flax] [poplar] GCP PF04130 [flax] [poplar] GCP_C_terminal Gamma tubulin complex component C-terminal
Representative CDS sequence Show only first row Show all	>Lus10029296 pacid=23139845 polypeptide=Lus10029296 locus=Lus10029296.g ID=Lus10029296.BGIv1.0 annot-version=v1.0 ATGGAAGACGAAGATCAGCAGAAGACGATAGATCTAGTTAAGGAGCTAGTTCACCGTCTCCTCTCTCCCAATCCAACCGCCGCCACCGCCGCAAACCCTA ATTCGCCCGATCTCACCAATTCTCTCCGTTACGCCGTCCGAATTCTCTCCAGCAGGCTCACTCCGTCGATCGCTCCCGATGCGGCGGCAATCGCCGAGTC CATCAAGCGCCGTCTCGCCACTCAAGGTAAGTCCTCCGAGGCGCTGACGTTCGCCGATCTGAACAACAAGTTCGCCTCCAAAGTAGGGCCCGGTAGTATC AACAACAAGTGGGCGGTTCTTTACTTGTTGAAGATTATATCCGAGGACAGGAAGCTGTCGCATTCCTCGCAGAGTTCGGCGCTTCTGCTGCCAAATTTGA GTCTGGACGACCGTGAATCATTCACGGAAGGGGAAGGGCGTGGTGGCTCGAGGAGAGGGGAGAGTGGGGTTCTTCTGGTGGCGAAGGACCCGGAGAATTT GCGGGAGATTGCGTTTAGGGAGTATGTGAATTTGGTTAGGGAGGAGAATGAGGTGTCTGAGGAGGTTTTAGTGAGGGATGTGTTGTATGCTTGCCAAGGG ATTGACGGGAAGTACGTGATATTCGATTCGAGTGAAGATGGTTATATGTTGCCAGAGACGTTTAAGGTTCCCAGGGCGAGTAGGGTTATGGTGAGGAAGC TTTGTGAATTGGGGTGGTTGTTTAGGAAGGTTAGAGGGTACATTTCTGAGAGTATGGATAGCTTCGCTACCGAAGAAGTGGGAACTGTAGGTCAGGCATT TTGCGCTGCTTTGCAAGATGAGCTTTCTGAGTACTATAGGTTATTAGCTGTGCTCGAGACACAGGCTACGAACCCGATTCCATTGGTTTCCGGGTCAGCT ACTTCGGGGAACTATCTATCATTGAGGAGGTTATCAGTTTGGTTTGTGGAGCCGATGGTGAAAATGAGGGTAATGGCTGTTTTGATCGATACTTGCAAAG TCTTGAAGGGTGGTGCCATGGCTGGAGCTATACATTTGCACGCTCAGCATGGCGATCCTCTTGTGAATGAGTTCATGAGGAGTTTGCTCCGACGAGTATG CTCTCCGCTTTTCGAAATGGTCAGACGATGGGTTTTGGAAGGAGAACTGGAAGATATATTTTCCGAGTTCTTTGTTGTGAGCGAGACGAAGGAATTGGAG TCTGATGTGAGCCAAAAGGGGAAAGAATCTCTTTGGAGGGAAGGCTACAGACTTCACTCCAAGATGCTTCCTTCTTTTATTTCTCAGTCCCTTGCTCAAC GCATTTTGAGGACCGGGAAATCGATTAACTTTCTACGTGTCTGCTGTGATGACCGTGGATGGGCTGATGCTGCCACAGAGGCTGGAGACGCAGCAGGGAC AAGTACTAGAAGGGGAAGTCTTGGATATGGCGAAACCGATGCGCTTGAAAATCTTGTTGCTGAAGCAGCAAAGAGAATTGATAAGCATCTACTGAACGTT ATGTATTCAAGGTATAAGTTCAAAGAGCATTGTCTTGCAATCAAGCGTTATTTATTGCTTGGCCAGGGTGACTTCGTTCAGTACCTAATGGATAGTATAG GGGAAGAGCTTTCTGAACCTGCTAATACCATCAGCACGTTCAAGTTAGCTGGCTTTTTGGAAAGTGCAATCCGATCGTCCAATGCTCAATACGATGACAG AGACATACTTGATAGGGTGAGGGTTAACATGATGGTACAAAGCACTGGTGATAGAGGATGGGATGTGTTCTCATTGGAATATGATGCTAGTGTGCCGTTG AATACAGTGTTCACAGAATCTGTCATGGCTGAATATCGCAGAATCTTTAACTTCCTATGGAAGCTGAGGCGAGTGGAGCATGCACTTATCGGCGCTTGGA AAACAATGAAACCGAATTGCATCACTTCTCATTCTTTTGTTAAGCTGCAGGGTGGGGTTAAATCACAGTTGCTTATAACTATGAGGCTATGCCAGGTAGA GGCGATGCCAGGTTCTCTGGAATGA
AA sequence Show only first row Show all	>Lus10029296 pacid=23139845 polypeptide=Lus10029296 locus=Lus10029296.g ID=Lus10029296.BGIv1.0 annot-version=v1.0 MEDEDQQKTIDLVKELVHRLLSPNPTAATAANPNSPDLTNSLRYAVRILSSRLTPSIAPDAAAIAESIKRRLATQGKSSEALTFADLNNKFASKVGPGSI NNKWAVLYLLKIISEDRKLSHSSQSSALLLPNLSLDDRESFTEGEGRGGSRRGESGVLLVAKDPENLREIAFREYVNLVREENEVSEEVLVRDVLYACQG IDGKYVIFDSSEDGYMLPETFKVPRASRVMVRKLCELGWLFRKVRGYISESMDSFATEEVGTVGQAFCAALQDELSEYYRLLAVLETQATNPIPLVSGSA TSGNYLSLRRLSVWFVEPMVKMRVMAVLIDTCKVLKGGAMAGAIHLHAQHGDPLVNEFMRSLLRRVCSPLFEMVRRWVLEGELEDIFSEFFVVSETKELE SDVSQKGKESLWREGYRLHSKMLPSFISQSLAQRILRTGKSINFLRVCCDDRGWADAATEAGDAAGTSTRRGSLGYGETDALENLVAEAAKRIDKHLLNV MYSRYKFKEHCLAIKRYLLLGQGDFVQYLMDSIGEELSEPANTISTFKLAGFLESAIRSSNAQYDDRDILDRVRVNMMVQSTGDRGWDVFSLEYDASVPL NTVFTESVMAEYRRIFNFLWKLRRVEHALIGAWKTMKPNCITSHSFVKLQGGVKSQLLITMRLCQVEAMPGSLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Lus10029296 [exp]	0	1
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10038008 [exp]	5.7	0.9083
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10008406 [exp]	8.1	0.9130
AT3G63250		HMT-2, ATHMT-2 ...	HOMOCYSTEINE METHYLTRANSFERASE...		Lus10014686 [exp]	11.8	0.8308
AT1G47790			F-box and associated interacti...		Lus10038864 [exp]	13.0	0.8580
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Lus10017413 [exp]	15.3	0.8913
AT2G05790			O-Glycosyl hydrolases family 1...		Lus10015151 [exp]	15.7	0.8900
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10010670 [exp]	19.7	0.8973
AT5G35430			Tetratricopeptide repeat (TPR)...		Lus10027703 [exp]	20.4	0.8677
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10042707 [exp]	20.4	0.8723
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Lus10015267 [exp]	21.1	0.8940

Compare expression of checked genes

Lus10029296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.