Plant FIBer expression Database

Lus10029297 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G06680 183 / 2e-54 ATSPC98, SPC98, ATGCP3 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016246
[exp]
304 / 2e-99 AT5G06680 1262 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G194200
[exp]
223 / 8e-69 AT5G06680 1201 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1)
Potri.016G059900
[exp]
221 / 4e-68 AT5G06680 1301 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1)
PFAM info
Representative CDS sequence
>Lus10029297 pacid=23139981 polypeptide=Lus10029297 locus=Lus10029297.g ID=Lus10029297.BGIv1.0 annot-version=v1.0
ATGGAAGCTGCAAAGGACCTCGATGATCTTCTTGCGGCACATGAAAAGTATCTTCACTCAATTGTCGAGAAGTCTCTCCTTGGCGAACGGTCTCGGCCTC
TTTGCAAGTCGCTTTTCGTTCTGTTCGACCTTATACTACGTTATAGAGGTCATGTCGATCGGTTATACGAAGGCATCTACGAGTTGCAAGCAAGAAATGC
AGGGTCCTTACCGTCTAAAGACAAGACCAAATCATCAAAGCAGACTGCAAAAAGACCTTCCAAGCCCGGATCATGGATTAGCGACGGAAGGAAAGCTCTC
ACACAACGGGCCGGGGAATTTCTTCAAACTATGGGGAAAGAATTAAACGCTACTGCAAAGGAATATACCTCTCTGCTGGAAGTTTTCTTATCTGAGTTGC
CTGTCCAGCAACACATTGATCTCAAGTTCCTTCTATTCCGGCTCGACTTCACCGAGTTTTATAGCCGACTCCATCCCACCAAATGA
AA sequence
>Lus10029297 pacid=23139981 polypeptide=Lus10029297 locus=Lus10029297.g ID=Lus10029297.BGIv1.0 annot-version=v1.0
MEAAKDLDDLLAAHEKYLHSIVEKSLLGERSRPLCKSLFVLFDLILRYRGHVDRLYEGIYELQARNAGSLPSKDKTKSSKQTAKRPSKPGSWISDGRKAL
TQRAGEFLQTMGKELNATAKEYTSLLEVFLSELPVQQHIDLKFLLFRLDFTEFYSRLHPTK

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G06680 ATSPC98, SPC98,... ARABIDOPSIS THALIANA GAMMA TUB... Lus10029297
[exp]
0 1
AT5G14640 ATSK13 shaggy-like kinase 13 (.1) Lus10013088
[exp]
1.0 0.9113
AT2G27970 CKS2 CDK-subunit 2 (.1) Lus10021405
[exp]
5.7 0.8716
AT4G37210 Tetratricopeptide repeat (TPR)... Lus10019658
[exp]
6.6 0.8829
AT5G48450 SKS3 SKU5 similar 3 (.1) Lus10038239
[exp]
7.9 0.8449
AT2G30620 winged-helix DNA-binding trans... Lus10022001
[exp]
10.2 0.8530
AT4G29410 Ribosomal L28e protein family ... Lus10012915
[exp]
12.8 0.8781
AT1G65650 UCH2 Peptidase C12, ubiquitin carbo... Lus10031062
[exp]
13.4 0.8703
AT5G03670 unknown protein Lus10035565
[exp]
18.7 0.8647
AT3G60660 unknown protein Lus10010359
[exp]
19.4 0.8640
AT5G40580 PBB2 20S proteasome beta subunit PB... Lus10014581
[exp]
20.8 0.8401

Lus10029297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.