Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29070 192 / 6e-58 Ubiquitin fusion degradation UFD1 family protein (.1.2) AT4G38930 186 / 1e-55 Ubiquitin fusion degradation UFD1 family protein (.1.2) AT2G21270 186 / 2e-55 UFD1 ubiquitin fusion degradation 1 (.1.2.3) AT4G15420 84 / 2e-17 Ubiquitin fusion degradation UFD1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018057 [exp] 189 / 5e-56 AT2G21270 480 / 2e-171 ubiquitin fusion degradation 1 (.1.2.3) Lus10042053 [exp] 174 / 2e-50 AT2G21270 420 / 4e-148 ubiquitin fusion degradation 1 (.1.2.3) Lus10004970 [exp] 159 / 1e-44 AT2G21270 330 / 8e-113 ubiquitin fusion degradation 1 (.1.2.3) Lus10001575 [exp] 124 / 4e-32 AT2G21270 259 / 3e-85 ubiquitin fusion degradation 1 (.1.2.3) Lus10016245 [exp] 100 / 3e-24 AT2G33710 78 / 3e-17 Integrase-type DNA-binding superfamily protein (.1.2) Lus10031538 [exp] 74 / 7e-14 AT4G15420 708 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1) Lus10015140 [exp] 74 / 8e-14 AT4G15420 809 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G163200 [exp] 187 / 7e-56 AT2G21270 487 / 7e-175 ubiquitin fusion degradation 1 (.1.2.3) Potri.009G124900 [exp] 186 / 2e-55 AT2G21270 485 / 4e-174 ubiquitin fusion degradation 1 (.1.2.3) Potri.001G242200 [exp] 184 / 1e-54 AT2G29070 403 / 6e-142 Ubiquitin fusion degradation UFD1 family protein (.1.2) Potri.014G156300 [exp] 72 / 3e-13 AT4G15420 733 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0402 [flax] [poplar] Cdc48_2-like PF03152 [flax] [poplar] UFD1 Ubiquitin fusion degradation protein UFD1
Representative CDS sequence Show only first row Show all	>Lus10029298 pacid=23139825 polypeptide=Lus10029298 locus=Lus10029298.g ID=Lus10029298.BGIv1.0 annot-version=v1.0 ATGTCAGAGGCATCCAATTCTTGTGGGGGGACTGATCCTTCAGGTACTAGTTCCAACCTGGACTTTCGGTACAATTTGAACGCTGGCAAGGAAGTGGACG CCTTGAAGCAGGAGGGTGTTCAGCAGTCTGGTTCGAATTTGGAGGCTGATTGGGGATATGCGTTCAATGATTTGCTGATTGGGGATATGTTTCGTGGCCC TCAAGTTTCGCTTGTTGTTATAACGATTGCGTCTCCTACTACTACTAGCACTCTATTTTCCTCTCCACAGGTCTCCAAATCTTCACCAGCAGCCGCCACC ATGGACTGCTTGGATTACACTGACAATACCGAGATCCCCACCGCCGATCCGAGTTCCCCCGAATCACCCCTTCCCCAGCCGGACGAAATGATGTCGGAAC CAGATCCAGAGGAGGCAGCTAATCCTGAAGCTATTCCTGAAAAGGAGGCGGCGGCTAAGGAGGGAGAGACCGAAACAGAAGACTCCGAGGAGGATGGTGA TTGCGAAACAGAGGACTCCGGGGAGGACAATGATTCCGACTCGGATGAACTGTGCGAAACCGCCAGAATAATCTTCGAGCGGTGCTACACCTGCCGTCCA CTGTCCGGGAAGGAGCACCTCGAACAAGGCGGGCAGATTGTAATGCCGGAATCCGCATTGGTGGAGCTCATGGACAAGGATGTTAGTTACCCGATGCTGT TCGGGATTCGGAATGAATCAGAATCGGACTCGAAGGCGTCTCACTGCGGGGTTGCGGAGTTCACCGCGGAGGAAGGAACGGTGATGGTGCCCAAATGGAT GATGAAGAATCTGAACGTGGAGGCTGGCAAGAGAGTGAAGCTGATCAAGAACGTCGAGGCCCTCGAAAAGTGCACCTACACCAAGCTGCAGCCACACTCG GTTGAATTCTGGGCGATTCGAGATATGAAGACTGCTCTCGAACAGATCCTGAGCGCCAACTTCTTCTGCTTGACTTCGGGGGACACGCTCCTGCTCGAGT ATCAAAGCAGGAAATTTTACGTCGATGTTGTCGAAACGAAGCCAGCCCCCGCGGTCTGTATTCTCGACACGGATTTCAAAGTGGACTTTGCTACTCCTCT GGATTACGTGGAGCCGAAGAAGGTTGAAGAAAAAGAGCAGGGACGGGTTCAAGAGGCTGGAGTATTCGTCCCGTTCTCCGGTGTGGGGAGGCGCTTGAAT GGTACAGCTGCCGTAGAGTCTGCAATGGTGGTGGAGGAGAAAGCTGCGGTGGTTAGAGAGGAAGTAAAGCAGTTTCAGCCATTTACTGGGAAGAAATATA CCTTAGCAGGATGA
AA sequence Show only first row Show all	>Lus10029298 pacid=23139825 polypeptide=Lus10029298 locus=Lus10029298.g ID=Lus10029298.BGIv1.0 annot-version=v1.0 MSEASNSCGGTDPSGTSSNLDFRYNLNAGKEVDALKQEGVQQSGSNLEADWGYAFNDLLIGDMFRGPQVSLVVITIASPTTTSTLFSSPQVSKSSPAAAT MDCLDYTDNTEIPTADPSSPESPLPQPDEMMSEPDPEEAANPEAIPEKEAAAKEGETETEDSEEDGDCETEDSGEDNDSDSDELCETARIIFERCYTCRP LSGKEHLEQGGQIVMPESALVELMDKDVSYPMLFGIRNESESDSKASHCGVAEFTAEEGTVMVPKWMMKNLNVEAGKRVKLIKNVEALEKCTYTKLQPHS VEFWAIRDMKTALEQILSANFFCLTSGDTLLLEYQSRKFYVDVVETKPAPAVCILDTDFKVDFATPLDYVEPKKVEEKEQGRVQEAGVFVPFSGVGRRLN GTAAVESAMVVEEKAAVVREEVKQFQPFTGKKYTLAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29070			Ubiquitin fusion degradation U...		Lus10029298 [exp]	0	1
AT1G47710			Serine protease inhibitor (SER...		Lus10019009 [exp]	1.0	0.9666
AT5G49630		AAP6	amino acid permease 6 (.1)		Lus10007235 [exp]	6.0	0.9624
AT4G00910			Aluminium activated malate tra...		Lus10001528 [exp]	8.2	0.9372
					Lus10030774 [exp]	10.4	0.9474
AT1G14205			Ribosomal L18p/L5e family prot...		Lus10012820 [exp]	10.6	0.9491
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10016720 [exp]	12.5	0.9601
AT1G22810	AP2_ERF		Integrase-type DNA-binding sup...		Lus10009468 [exp]	12.8	0.9382
					Lus10038978 [exp]	13.9	0.9215
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10036014 [exp]	15.9	0.9599
AT4G23690			Disease resistance-responsive ...		Lus10024714 [exp]	16.7	0.9587

Compare expression of checked genes

Lus10029298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.