Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58050 713 / 0 unknown protein AT2G41960 587 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016244 [exp] 1563 / 0 AT3G58050 851 / 0.0 unknown protein Lus10021073 [exp] 1156 / 0 AT3G58050 984 / 0.0 unknown protein Lus10017239 [exp] 692 / 0 AT3G58050 768 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G060200 [exp] 957 / 0 AT3G58050 1131 / 0.0 unknown protein Potri.006G194500 [exp] 949 / 0 AT3G58050 1083 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029299 pacid=23139928 polypeptide=Lus10029299 locus=Lus10029299.g ID=Lus10029299.BGIv1.0 annot-version=v1.0 ATGCCGGGACTGCCGCAGAAGTACGAGCAATTCAGTACTAGTAACGTATCGTACTCCGTCTCCAGCAATGGATTCTGGTCCAAGCACAGCGATGATCTCG GTTACAATCAGCTCCAGAAGGTCGTAGACTATGTCGTTTGTCTGTTGACTAAAATGTTCAAAACTCATCAAATGGATGGTGTAACAAATATGATCATGGG CTGTCGAGATGAAATTCAAGATCCAGCTGTACATCATTGGGGTGGTTTAACAACTACGCGGGGTGGATCCTTGACACTTTTGGATTGCTACGTGTGTTCA AAATCTCATGAAGGACTTCAAAACGTCTTTAATAGTGCGCGTGCACGGGAGAGGGAAAGGGAACTGCTCTATCCAGATGCTTGTGGTGGCGGAGGCCGGG GCTGGATAAGCCAAGGAATGCCAACTTACAGTAGAGGCCATGGAACAAGAGAAACATGTGCATTACACACAGCCAGGCTTTCGTGCGACACATTAGTGGA TTTCTGGTCAGCTTTGGCAGAAGAGAACAGGCAGTCTCTTCTTAGGATGAAAGAAGAAGATTTCATTGAACGGCTTATGTATAGGTTTGACAGCAAGAGA TTCTGCAGAGATTGTAGGAGGAATGTTATCAGAGAATTCAAGGAGCTTAAAGAATTGAAGCGTATGCGAAGAGAACAACGTTGCACTAGTTGGTTTTGTG GTGCAGATACTGCTTTCCAGTATGAGGTGTCAGATGACATGATACAAGCTGATTGGCACCAAACCTTTGCCGATTCTGTTGGGACTTACCATCACTTTGA ATGGGCTGTTGGAACAGGAGAAGGGAAGTCTGACATTTTAGAATTTGAAAATGTAGGGATGAATGATAGTGTGCAAGCTGATGGGTTGGATCTGAGTGAT TTGACGGCATGCTTCATCACGTTGCGGGCTTGGAAAATGGATGGCCGCTGCACTGAGTTTACTGTAAAAGCCCATGCATTAAAGGGTCAACAATGCGTTC ATTGCAGGTTAATAGTTGGTGATGGTTTTATTACAATTACTAGAGGTGAAAGCATCAGAAATTTTTTTGAACATGCTGAAGAGTGTGAGGAAGAAGAGGA TGATGACTCCATGGAGAAGGATGGCAATGAGCTTGATGGAGAATGCTCCCGTCCCCAAAAGCATGCGAAGAGTCCTGAACTTGCGCGAGAATTTCTTCTA GATGCTGCTACTGTCGAAAAGGCTTTCAGAGAAGGAACTGCACAACAAAATGCCCATAGCATTTTTATCTGCCTTGCACTAAACCTGTTAGAAGAACGGA TCCATGTTGCATGCAAAGAAATTATTACTCTGGAAAAGCAGACGAAATTGCTTGAAGAAGAAGAGAAGGAGAAGCGCGAAGAAGAAGAGCGCAAGGAGAG AAGAAGACTAAAAGAAAGAGAAAAGAAGAATCGCAGAAAAGAGAGGTTAAAAGGGAAAGAAAGGGATAAAGATAAAGGTTCCGAACCGAATGACGTCTCT CTTCTTGATGCAGTTAAGGACGAGTCTTCACTAGCATCCAGTGAAGATCCTAATAACAGCGTCCGTAGCGGGGATTCTGTAAGTGAAACATGTGATAATT CTGTGTCCAGTCCAGGATCACCGAACACAGAAGAACAATTTTCCAATGGGTGCACCACGTTCATCAAGCAAGATGATTCGTATGATTGTCCGGAAGAGGA TGTTATAAACGGGAAAGATGGAAGTGGCTCTTTCATAGTCGAGCAATCAAAATCTTCACGCCGGAGATTGAAGTTTTGGAAAGAGGTCCAGCTGGATTCG TCTGATAGACGTGGACCAGCTAGTAGATCTGACTCAAGGAATCATGGTGAAAATTTCGAGATTCCTTCAAGGAGCGTCAATGGATCGAGTAGACCAGCAA GGACGATGGCACCGAAGTTTAACAGTCGAAACTATGGCCCGAGGTTCAGTGAGAAGTTAAATGGTTCCAACAGCCAGGTTAGTGAAAGATTTGACTTCCA TTCTTGTAGTTGCAATCAAGCTAATGGATACACAGCAAAAGTTGGGAGGGGCAGTAACTGTGCCTGTAAGTCTGGACATGCAGCAGATATTCTGAAGCAA TTTCATCGTGATAACAAGTACAGTCAAGCTGATTACACTCATGAAGGTTGCGGAAGACCCAGAAACAAGGGTTCGACCGTGAATCCTTCTGTACCCCATG CCAAGAAAGTATGGGAGCCCATGGATTCTCAGAAGAGGTATCCTAGGACTAATTCAGAGAGTGATTTCTCTAAGCCATCTAGTGGGAACTGTTGGAGCAA AGTCAACGGAAATTCTGGGGAAACTAGTCAGATCGACTGTAAAATGAGTGAAGCTATAGAAGATTGCAGTGCTGATGCAGCAAAGGATGGAGAAGTCAAT TCGAGTCCTCCGAATGGCTCACAATCTAACGGGGCTTCCAATCCTAGCTCCGTTATCACGTTGAATTCTGACAACAGTTCGTCGTGTCTGAGCGAAGGAG ATAGCAACGCCGCCTCTTCAAATCATGGACATCTGGGATCCTCTTCCGCATCAGACTCCGAGGACTCCAGTCAGCAATCAGAAGGCAGAGAAACTGGTTT TCCTGAGAGTCACGAAGCTAGAACGCCGAAAAACCCTGGTTCGGCAAATGTGCAGCCTTCGAATGGTCTGAAGTTCCATGGAATCCAGTCTGATGGTCCA AGAGTAAGCAGCTGTACAGGAGACGGTCTCGCAAAAGCCACCGCCGATGACACTGTCAGCAATGTTACTACCACCGGCGCTCAACATCAAGGCGTGTTCG CACCATTGGCGAACCAGAGCTTACAGTACTCAGTGTTTCAAGCTCCTCCATCAGTGAGTTACTATCATCAAAATCTAGTCTCTTGGTCAGCCGCACCGGC AATCCCCTTTCACCACCCGAACCATCACCACCTCTACGCTAGCCCGATGAGGTACGGTCTCGATGGAAACTCGCACTTGTGTATGCAGTATGGTGGTCCG ATGCAGCCTGTCACGACGACAACTCCTCCCGTGTTCAACCCGAGTCCACCGCAAGTCCTGGTCGCGGAGGCACAACTGGAGAAAAATACCGGAAATGGTA GGAAGATAGATAGCTTTGCCAAACTGAACATGGTGAATAATGATTTCTCCTTGTTCCAGTTCGGGTGGCCTTTGAAAGACGGAGTAGATGTTTCGGCAGG AGATCGAATCGAGAGCAATTCGGAGGAGAATGTAATGGAAGAGTACAACTTGTTTGCAGCAAGTAACAACAGTATGAAGTTTTCCTTCTTTTAA
AA sequence Show only first row Show all	>Lus10029299 pacid=23139928 polypeptide=Lus10029299 locus=Lus10029299.g ID=Lus10029299.BGIv1.0 annot-version=v1.0 MPGLPQKYEQFSTSNVSYSVSSNGFWSKHSDDLGYNQLQKVVDYVVCLLTKMFKTHQMDGVTNMIMGCRDEIQDPAVHHWGGLTTTRGGSLTLLDCYVCS KSHEGLQNVFNSARARERERELLYPDACGGGGRGWISQGMPTYSRGHGTRETCALHTARLSCDTLVDFWSALAEENRQSLLRMKEEDFIERLMYRFDSKR FCRDCRRNVIREFKELKELKRMRREQRCTSWFCGADTAFQYEVSDDMIQADWHQTFADSVGTYHHFEWAVGTGEGKSDILEFENVGMNDSVQADGLDLSD LTACFITLRAWKMDGRCTEFTVKAHALKGQQCVHCRLIVGDGFITITRGESIRNFFEHAEECEEEEDDDSMEKDGNELDGECSRPQKHAKSPELAREFLL DAATVEKAFREGTAQQNAHSIFICLALNLLEERIHVACKEIITLEKQTKLLEEEEKEKREEEERKERRRLKEREKKNRRKERLKGKERDKDKGSEPNDVS LLDAVKDESSLASSEDPNNSVRSGDSVSETCDNSVSSPGSPNTEEQFSNGCTTFIKQDDSYDCPEEDVINGKDGSGSFIVEQSKSSRRRLKFWKEVQLDS SDRRGPASRSDSRNHGENFEIPSRSVNGSSRPARTMAPKFNSRNYGPRFSEKLNGSNSQVSERFDFHSCSCNQANGYTAKVGRGSNCACKSGHAADILKQ FHRDNKYSQADYTHEGCGRPRNKGSTVNPSVPHAKKVWEPMDSQKRYPRTNSESDFSKPSSGNCWSKVNGNSGETSQIDCKMSEAIEDCSADAAKDGEVN SSPPNGSQSNGASNPSSVITLNSDNSSSCLSEGDSNAASSNHGHLGSSSASDSEDSSQQSEGRETGFPESHEARTPKNPGSANVQPSNGLKFHGIQSDGP RVSSCTGDGLAKATADDTVSNVTTTGAQHQGVFAPLANQSLQYSVFQAPPSVSYYHQNLVSWSAAPAIPFHHPNHHHLYASPMRYGLDGNSHLCMQYGGP MQPVTTTTPPVFNPSPPQVLVAEAQLEKNTGNGRKIDSFAKLNMVNNDFSLFQFGWPLKDGVDVSAGDRIESNSEENVMEEYNLFAASNNSMKFSFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58050			unknown protein		Lus10029299 [exp]	0	1
AT1G15130			Endosomal targeting BRO1-like ...		Lus10034634 [exp]	1.0	0.9154
AT1G01220		AtFKGP	Arabidopsis thaliana L-fucokin...		Lus10030230 [exp]	1.4	0.8862
AT2G04620			Cation efflux family protein (...		Lus10013358 [exp]	4.0	0.8768
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10035695 [exp]	4.0	0.8324
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10014619 [exp]	5.0	0.8268
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10021442 [exp]	5.2	0.8772
AT5G11430			SPOC domain / Transcription el...		Lus10013146 [exp]	6.5	0.8609
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10038816 [exp]	6.5	0.8645
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10028796 [exp]	7.1	0.8689
AT4G37270		ATHMA1, HMA1	ARABIDOPSIS THALIANA HEAVY MET...		Lus10019313 [exp]	9.4	0.8444

Compare expression of checked genes

Lus10029299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.