Plant FIBer expression Database

Lus10029301 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G41950 228 / 2e-74 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016243
[exp]
460 / 7e-166 AT2G41950 211 / 6e-68 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G194600
[exp]
266 / 2e-89 AT2G41950 276 / 4e-93 unknown protein
PFAM info
Representative CDS sequence
>Lus10029301 pacid=23139978 polypeptide=Lus10029301 locus=Lus10029301.g ID=Lus10029301.BGIv1.0 annot-version=v1.0
ATGAATTCAATCACATTCCCCTCGACACTCATTCTTCAGGCGCCATCGAACCATACTTGGTTGAATCGACTATCCATCTCTTCTCAGACTTCCAGACATC
CTTCTTCATCAACTCTGATCACCAACTCGTTCACTCTCCGCACTTCTTCAATCGATGCAGCAGTTCCTTCCGAAGAAGGATCTATACCTGTTATGAGCTT
TGAAGACTTTGTTGAGAAAGACTGGTCCTTTCTCGACCCCGAGGAGCCATCAGATTCGAAAGATGTAAGACAGAACAACAGCCGGATAATTTCTGCAGGA
GGGATCACTGAGGCCTCGAAGGTTTTGGTTTCGACGAGCTCCGAAGAGTTTGTGGATCAACTGGTGGATGAATCATCATTGTACAGTTTCTTGCTTGTTG
TGCATGAATCGCTCTTGACGTTGGCTCTTCTCAAAGAGAAGTATGATGAGAATTTGAAGTGTTGGCAAGGTGAACTGATTGATCTTCCTGAGAAATGGAC
ATCGCTTGATGTTGTCTTCCTGTATTTTCTGCCTGCCTTGCCCTCCAAGCTTGACCAAGTTCTTGAGAAGCTTGTCAGACACTGCTCACCAGGTGCAAGA
GTGGTGATTAGCCATCCGCAAGGAAGAGAAAAGCTGGAACAGCAAAGACAGGAGTATCCTGAACTCATAGTTTCACAGCTGCCTGATGAGATCTCTTTGC
AAGAGGTTGCATCATCCCGTTCGTTCGAGGTCACGGAATTCGTGGATGAACCAGGGTTTTATCTTGCTGTTCTTCGATTTTGTGGTTCAACTGCATAG
AA sequence
>Lus10029301 pacid=23139978 polypeptide=Lus10029301 locus=Lus10029301.g ID=Lus10029301.BGIv1.0 annot-version=v1.0
MNSITFPSTLILQAPSNHTWLNRLSISSQTSRHPSSSTLITNSFTLRTSSIDAAVPSEEGSIPVMSFEDFVEKDWSFLDPEEPSDSKDVRQNNSRIISAG
GITEASKVLVSTSSEEFVDQLVDESSLYSFLLVVHESLLTLALLKEKYDENLKCWQGELIDLPEKWTSLDVVFLYFLPALPSKLDQVLEKLVRHCSPGAR
VVISHPQGREKLEQQRQEYPELIVSQLPDEISLQEVASSRSFEVTEFVDEPGFYLAVLRFCGSTA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G41950 unknown protein Lus10029301
[exp]
0 1
AT5G24314 PDE225, PTAC7 PIGMENT DEFECTIVE 225, plastid... Lus10041454
[exp]
2.4 0.9021
AT3G09860 unknown protein Lus10023014
[exp]
2.8 0.9029
AT3G10670 ABCI6, ATNAP7 ATP-binding cassette I6, non-i... Lus10034152
[exp]
4.0 0.8562
AT2G30695 unknown protein Lus10008363
[exp]
6.4 0.9037
AT2G32180 PTAC18 plastid transcriptionally acti... Lus10035307
[exp]
8.2 0.8770
AT2G28230 TATA-binding related factor (T... Lus10030830
[exp]
14.5 0.8451
AT3G62000 S-adenosyl-L-methionine-depend... Lus10036339
[exp]
22.8 0.8604
AT4G13590 Uncharacterized protein family... Lus10011763
[exp]
24.0 0.8197
AT3G59040 Tetratricopeptide repeat (TPR)... Lus10027829
[exp]
24.5 0.8576
AT2G17695 unknown protein Lus10028386
[exp]
29.7 0.8498

Lus10029301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.